RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 SPRR2DP22532 72 aa7.03□□□□□ -1.28
PHGDH-234ENST00000642041 MT1XP80297 61 aa6.98□□□□□ -1.29
PHGDH-234ENST00000642041 LCE3BQ5TA77 95 aa6.91□□□□□ -1.3
PHGDH-234ENST00000642041 KRTAP8-1Q8IUC2 63 aa6.86□□□□□ -1.31
PHGDH-234ENST00000642041 KRTAP10-12P60413 245 aa6.77□□□□□ -1.33
PHGDH-234ENST00000642041 DSTQ03001 7570 aaKnown RBP6.76□□□□□ -1.33
PHGDH-234ENST00000642041 LCE3AQ5TA76 89 aa6.66□□□□□ -1.34
PHGDH-234ENST00000642041 KRTAP4-9Q9BYQ8 210 aa6.65□□□□□ -1.34
PHGDH-234ENST00000642041 KRTAP10-7P60409 375 aaPredicted RBP6.64□□□□□ -1.35
PHGDH-234ENST00000642041 KRTAP4-8A0A0G2JLE6 195 aa6.57□□□□□ -1.36
PHGDH-234ENST00000642041 KRTAP4-8Q9BYQ9 185 aa6.57□□□□□ -1.36
PHGDH-234ENST00000642041 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
PHGDH-234ENST00000642041 KRTAP12-3P60328 96 aa6.52□□□□□ -1.37
PHGDH-234ENST00000642041 KRTAP15-1Q3LI76 137 aa6.46□□□□□ -1.38
PHGDH-234ENST00000642041 AHNAK2Q8IVF2 5795 aa6.45□□□□□ -1.38
PHGDH-234ENST00000642041 HMCN1Q96RW7 5635 aa6.45□□□□□ -1.38
PHGDH-234ENST00000642041 LCE1DQ5T752 114 aa6.4□□□□□ -1.38
PHGDH-234ENST00000642041 KRTAP5-10Q6L8G5 202 aa6.39□□□□□ -1.39
PHGDH-234ENST00000642041 KRTAP19-5Q3LI72 72 aa6.33□□□□□ -1.4
PHGDH-234ENST00000642041 LUZP6Q538Z0 58 aa6.31□□□□□ -1.4
PHGDH-234ENST00000642041 KRTAP5-7Q6L8G8 165 aa6.26□□□□□ -1.41
PHGDH-234ENST00000642041 SPRR5A0A1B0GTR4 108 aa6.24□□□□□ -1.41
PHGDH-234ENST00000642041 KRTAP19-7Q3SYF9 63 aa6.22□□□□□ -1.41
PHGDH-234ENST00000642041 MT4P47944 62 aa6.21□□□□□ -1.42
PHGDH-234ENST00000642041 LCE4AQ5TA78 99 aa6.18□□□□□ -1.42
PHGDH-234ENST00000642041 LCE5AQ5TCM9 118 aa6.16□□□□□ -1.42
PHGDH-234ENST00000642041 MT1EP04732 61 aa6.15□□□□□ -1.42
PHGDH-234ENST00000642041 LCE3CQ5T5A8 94 aa6.1□□□□□ -1.43
PHGDH-234ENST00000642041 KRTAP5-3Q6L8H2 238 aa6.04□□□□□ -1.44
PHGDH-234ENST00000642041 MT1LQ93083 61 aa6.04□□□□□ -1.44
PHGDH-234ENST00000642041 MT1GP13640 62 aa6.02□□□□□ -1.45
PHGDH-234ENST00000642041 KRTAP19-3Q7Z4W3 81 aa6.01□□□□□ -1.45
PHGDH-234ENST00000642041 KRTAP4-6Q9BYQ5 205 aa5.95□□□□□ -1.46
PHGDH-234ENST00000642041 NDUFAF8A1L188 74 aa5.92□□□□□ -1.46
PHGDH-234ENST00000642041 KRTAP5-4Q6L8H1 288 aa5.91□□□□□ -1.46
PHGDH-234ENST00000642041 MT1MQ8N339 61 aa5.8□□□□□ -1.48
PHGDH-234ENST00000642041 KRTAP4-7Q9BYR0 210 aa5.65□□□□□ -1.5
PHGDH-234ENST00000642041 KRTAP20-2Q3LI61 65 aa5.63□□□□□ -1.51
PHGDH-234ENST00000642041 KRTAP4-3Q9BYR4 195 aa5.58□□□□□ -1.52
PHGDH-234ENST00000642041 AHNAKQ09666 5890 aaKnown RBP5.56□□□□□ -1.52
PHGDH-234ENST00000642041 A0A0A0MQY5 61 aa5.53□□□□□ -1.52
PHGDH-234ENST00000642041 KRTAP9-6A8MVA2 160 aa5.53□□□□□ -1.52
PHGDH-234ENST00000642041 MUC5ACP98088 5654 aa5.47□□□□□ -1.53
PHGDH-234ENST00000642041 MUC5BQ9HC84 5762 aaPredicted RBP5.45□□□□□ -1.54
PHGDH-234ENST00000642041 KRTAP12-4P60329 112 aa5.36□□□□□ -1.55
PHGDH-234ENST00000642041 KRTAP4-11Q9BYQ6 195 aa5.35□□□□□ -1.55
PHGDH-234ENST00000642041 H3BS24 57 aa5.34□□□□□ -1.55
PHGDH-234ENST00000642041 LOC100996750A0A140TA64 210 aa5.32□□□□□ -1.56
PHGDH-234ENST00000642041 KRTAP5-5Q701N2 237 aaPredicted RBP5.28□□□□□ -1.56
PHGDH-234ENST00000642041 KRTAP5-8O75690 187 aa5.24□□□□□ -1.57
PHGDH-234ENST00000642041 SYNE1Q8NF91 8797 aaKnown RBP5.23□□□□□ -1.57
PHGDH-234ENST00000642041 MT1AP04731 61 aa5.22□□□□□ -1.57
PHGDH-234ENST00000642041 INE1O15225 51 aa5.2□□□□□ -1.58
PHGDH-234ENST00000642041 KRTAP9-9Q9BYP9 154 aa5.08□□□□□ -1.6
PHGDH-234ENST00000642041 KRTAP5-2Q701N4 177 aa5.03□□□□□ -1.6
PHGDH-234ENST00000642041 KRTAP6-1Q3LI64 71 aa5.01□□□□□ -1.61
PHGDH-234ENST00000642041 KRTAP9-4Q9BYQ2 154 aa4.95□□□□□ -1.62
PHGDH-234ENST00000642041 OBSCNQ5VST9 7968 aa4.94□□□□□ -1.62
PHGDH-234ENST00000642041 MT3P25713 68 aa4.8□□□□□ -1.64
PHGDH-234ENST00000642041 KRTAP6-2Q3LI66 62 aa4.67□□□□□ -1.66
PHGDH-234ENST00000642041 KRTAP5-1Q6L8H4 278 aa4.67□□□□□ -1.66
PHGDH-234ENST00000642041 LCE3DQ9BYE3 92 aa4.65□□□□□ -1.67
PHGDH-234ENST00000642041 LCE3EQ5T5B0 92 aa4.55□□□□□ -1.68
PHGDH-234ENST00000642041 KRTAP4-12Q9BQ66 201 aa4.44□□□□□ -1.7
PHGDH-234ENST00000642041 LCE1EQ5T753 118 aa4.21□□□□□ -1.74
PHGDH-234ENST00000642041 KRTAP4-2Q9BYR5 136 aa4.01□□□□□ -1.77
PHGDH-234ENST00000642041 LCE1BQ5T7P3 118 aa3.96□□□□□ -1.78
PHGDH-234ENST00000642041 PRM1P04553 51 aa3.87□□□□□ -1.79
PHGDH-234ENST00000642041 LCE1CQ5T751 118 aa3.86□□□□□ -1.79
PHGDH-234ENST00000642041 KRTAP5-11Q6L8G4 156 aa3.77□□□□□ -1.81
PHGDH-234ENST00000642041 PHGR1C9JFL3 82 aa3.75□□□□□ -1.81
PHGDH-234ENST00000642041 LCE1FQ5T754 118 aa3.7□□□□□ -1.82
PHGDH-234ENST00000642041 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.65□□□□□ -1.83
PHGDH-234ENST00000642041 KRTAP21-2Q3LI59 83 aa3.3□□□□□ -1.88
PHGDH-234ENST00000642041 MUC19Q7Z5P9 8384 aa3.1□□□□□ -1.91
PHGDH-234ENST00000642041 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
PHGDH-234ENST00000642041 KRTAP21-1Q3LI58 79 aa2.87□□□□□ -1.95
PHGDH-234ENST00000642041 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 58.3 ms