RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 TFF3Q07654 80 aa-5.64□□□□□ -3.31
SCN1A-215ENST00000637285 SMIM2Q9BVW6 85 aa-5.64□□□□□ -3.31
SCN1A-215ENST00000637285 XIRP2A4UGR9 3374 aa-5.69□□□□□ -3.32
SCN1A-215ENST00000637285 UGGT1Q9NYU2 1555 aa-5.69□□□□□ -3.32
SCN1A-215ENST00000637285 DUOX2Q9NRD8 1548 aa-5.69□□□□□ -3.32
SCN1A-215ENST00000637285 RHPN1-AS1Q9BWJ2 59 aa-5.72□□□□□ -3.33
SCN1A-215ENST00000637285 ASPMQ8IZT6 3477 aa-5.73□□□□□ -3.33
SCN1A-215ENST00000637285 CD52P31358 61 aa-5.76□□□□□ -3.33
SCN1A-215ENST00000637285 AGLP35573 1532 aa-5.76□□□□□ -3.33
SCN1A-215ENST00000637285 VCANP13611 3396 aa-5.76□□□□□ -3.33
SCN1A-215ENST00000637285 CENPFP49454 3210 aa-5.77□□□□□ -3.33
SCN1A-215ENST00000637285 HTN1P15515 57 aa-5.81□□□□□ -3.34
SCN1A-215ENST00000637285 PEG3Q9GZU2 1588 aa-5.83□□□□□ -3.34
SCN1A-215ENST00000637285 IQGAP3Q86VI3 1631 aa-5.88□□□□□ -3.35
SCN1A-215ENST00000637285 DDX60Q8IY21 1712 aaKnown RBP-5.88□□□□□ -3.35
SCN1A-215ENST00000637285 RB1CC1Q8TDY2 1594 aa-5.89□□□□□ -3.35
SCN1A-215ENST00000637285 PLNP26678 52 aa-5.89□□□□□ -3.35
SCN1A-215ENST00000637285 A0A096LNI7 61 aa-5.9□□□□□ -3.35
SCN1A-215ENST00000637285 BRCA2P51587 3418 aa-5.91□□□□□ -3.36
SCN1A-215ENST00000637285 CDH23Q9H251 3354 aa-5.91□□□□□ -3.36
SCN1A-215ENST00000637285 LINC01590Q5TEZ4 76 aa-5.92□□□□□ -3.36
SCN1A-215ENST00000637285 CLTCL1P53675 1640 aa-5.92□□□□□ -3.36
SCN1A-215ENST00000637285 TRPM2O94759 1503 aa-5.93□□□□□ -3.36
SCN1A-215ENST00000637285 CCDC18Q5T9S5 1454 aa-5.96□□□□□ -3.36
SCN1A-215ENST00000637285 TOMM7Q9P0U1 55 aa-5.96□□□□□ -3.36
SCN1A-215ENST00000637285 CPS1P31327 1500 aa-5.99□□□□□ -3.37
SCN1A-215ENST00000637285 UGGT2Q9NYU1 1516 aa-5.99□□□□□ -3.37
SCN1A-215ENST00000637285 ABCA5Q8WWZ7 1642 aa-6.05□□□□□ -3.38
SCN1A-215ENST00000637285 GNG2P59768 71 aa-6.09□□□□□ -3.38
SCN1A-215ENST00000637285 VPS13AQ96RL7 3174 aa-6.1□□□□□ -3.39
SCN1A-215ENST00000637285 PDCD5O14737 125 aa-6.1□□□□□ -3.39
SCN1A-215ENST00000637285 PRXQ9BXM0 1461 aa-6.1□□□□□ -3.39
SCN1A-215ENST00000637285 NFAT5O94916 1531 aa-6.14□□□□□ -3.39
SCN1A-215ENST00000637285 NDUFA1O15239 70 aa-6.18□□□□□ -3.4
SCN1A-215ENST00000637285 DEFB124Q8NES8 71 aa-6.18□□□□□ -3.4
SCN1A-215ENST00000637285 ADCY10Q96PN6 1610 aa-6.18□□□□□ -3.4
SCN1A-215ENST00000637285 IQGAP1P46940 1657 aa-6.19□□□□□ -3.4
SCN1A-215ENST00000637285 ABCA10Q8WWZ4 1543 aa-6.22□□□□□ -3.41
SCN1A-215ENST00000637285 SMCO4Q9NRQ5 59 aa-6.23□□□□□ -3.41
SCN1A-215ENST00000637285 EFCAB5A4FU69 1503 aa-6.3□□□□□ -3.42
SCN1A-215ENST00000637285 DUOX1Q9NRD9 1551 aa-6.43□□□□□ -3.44
SCN1A-215ENST00000637285 LINC01556Q5JQF7 62 aa-6.45□□□□□ -3.44
SCN1A-215ENST00000637285 A0A087WWC5 75 aa-6.47□□□□□ -3.45
SCN1A-215ENST00000637285 FANCD2Q9BXW9 1451 aa-6.48□□□□□ -3.45
SCN1A-215ENST00000637285 ABCC8Q09428 1581 aa-6.49□□□□□ -3.45
SCN1A-215ENST00000637285 CMC2Q9NRP2 79 aa-6.52□□□□□ -3.45
SCN1A-215ENST00000637285 ERICH3Q5RHP9 1530 aa-6.53□□□□□ -3.45
SCN1A-215ENST00000637285 SMIM5Q71RC9 77 aa-6.55□□□□□ -3.46
SCN1A-215ENST00000637285 TOP2AP11388 1531 aaKnown RBP-6.59□□□□□ -3.46
SCN1A-215ENST00000637285 UTRNP46939 3433 aa-6.63□□□□□ -3.47
SCN1A-215ENST00000637285 RPL39P62891 51 aaKnown RBP-6.64□□□□□ -3.47
SCN1A-215ENST00000637285 SAMD9LQ8IVG5 1584 aa-6.68□□□□□ -3.48
SCN1A-215ENST00000637285 DEFB104AQ8WTQ1 72 aa-6.79□□□□□ -3.5
SCN1A-215ENST00000637285 RPL39LQ96EH5 51 aaKnown RBP-6.83□□□□□ -3.5
SCN1A-215ENST00000637285 ATP7AQ04656 1500 aa-6.83□□□□□ -3.5
SCN1A-215ENST00000637285 H3BUX3 64 aa-6.85□□□□□ -3.51
SCN1A-215ENST00000637285 MROH2BQ7Z745 1585 aa-6.99□□□□□ -3.53
SCN1A-215ENST00000637285 APELAP0DMC3 54 aa-7.1□□□□□ -3.55
SCN1A-215ENST00000637285 A0A096LPF7 62 aa-7.2□□□□□ -3.56
SCN1A-215ENST00000637285 GOLGB1Q14789 3259 aaKnown RBP-7.35□□□□□ -3.59
SCN1A-215ENST00000637285 K7EIM0 57 aa-7.4□□□□□ -3.59
SCN1A-215ENST00000637285 HTN3P15516 51 aa-7.43□□□□□ -3.6
SCN1A-215ENST00000637285 SNRPGP15A8MWD9 76 aa-7.49□□□□□ -3.61
SCN1A-215ENST00000637285 PRCDQ00LT1 54 aa-7.53□□□□□ -3.61
SCN1A-215ENST00000637285 IQGAP2Q13576 1575 aa-7.56□□□□□ -3.62
SCN1A-215ENST00000637285 ARHGAP5-AS1Q96IT6 56 aa-7.61□□□□□ -3.63
SCN1A-215ENST00000637285 TMEM167AQ8TBQ9 72 aa-7.63□□□□□ -3.63
SCN1A-215ENST00000637285 SMIM31A0A1B0GVY4 71 aa-7.67□□□□□ -3.64
SCN1A-215ENST00000637285 TOMM5Q8N4H5 51 aa-7.77□□□□□ -3.65
SCN1A-215ENST00000637285 Q9Y3F1 56 aa-7.98□□□□□ -3.69
SCN1A-215ENST00000637285 H3BSH0 61 aa-8.02□□□□□ -3.69
SCN1A-215ENST00000637285 SNRPGP62308 76 aaKnown RBP-8.23□□□□□ -3.73
SCN1A-215ENST00000637285 RPL39P5Q59GN2 51 aa-8.26□□□□□ -3.73
SCN1A-215ENST00000637285 DEFB108AA8MXU0 73 aa-8.35□□□□□ -3.75
SCN1A-215ENST00000637285 COX14Q96I36 57 aa-8.39□□□□□ -3.75
SCN1A-215ENST00000637285 GCC2Q8IWJ2 1684 aa-8.46□□□□□ -3.76
SCN1A-215ENST00000637285 DEFB108BQ8NET1 73 aa-8.78□□□□□ -3.81
SCN1A-215ENST00000637285 STATHP02808 62 aa-9.34□□□□□ -3.9
Retrieved 78 of 20,778 RNA–protein pairs in 51.4 ms