RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 KRTAP19-3Q7Z4W3 81 aa7.39□□□□□ -1.23
PTCD3-220ENST00000627371 LCE5AQ5TCM9 118 aa7.37□□□□□ -1.23
PTCD3-220ENST00000627371 MT1GP13640 62 aa7.26□□□□□ -1.25
PTCD3-220ENST00000627371 LCE3BQ5TA77 95 aa7.26□□□□□ -1.25
PTCD3-220ENST00000627371 MT1LQ93083 61 aa7.26□□□□□ -1.25
PTCD3-220ENST00000627371 KRTAP12-3P60328 96 aa7.24□□□□□ -1.25
PTCD3-220ENST00000627371 KRTAP2-2Q9BYT5 123 aa7.23□□□□□ -1.25
PTCD3-220ENST00000627371 KRTAP2-1Q9BYU5 128 aa7.23□□□□□ -1.25
PTCD3-220ENST00000627371 ROMO1P60602 79 aa7.22□□□□□ -1.25
PTCD3-220ENST00000627371 PP632Q6XCG6 107 aa7.2□□□□□ -1.26
PTCD3-220ENST00000627371 KRTAP23-1A1A580 65 aa7.19□□□□□ -1.26
PTCD3-220ENST00000627371 MT1MQ8N339 61 aa7.14□□□□□ -1.27
PTCD3-220ENST00000627371 DSTQ03001 7570 aaKnown RBP7.11□□□□□ -1.27
PTCD3-220ENST00000627371 KRTAP4-12Q9BQ66 201 aa7.01□□□□□ -1.29
PTCD3-220ENST00000627371 BRK1Q8WUW1 75 aa7□□□□□ -1.29
PTCD3-220ENST00000627371 KRTAP4-3Q9BYR4 195 aa6.94□□□□□ -1.3
PTCD3-220ENST00000627371 KRTAP4-7Q9BYR0 210 aa6.9□□□□□ -1.3
PTCD3-220ENST00000627371 KRTAP15-1Q3LI76 137 aa6.88□□□□□ -1.31
PTCD3-220ENST00000627371 KRTAP19-4Q3LI73 84 aa6.87□□□□□ -1.31
PTCD3-220ENST00000627371 KRTAP9-9Q9BYP9 154 aa6.8□□□□□ -1.32
PTCD3-220ENST00000627371 KRTAP9-4Q9BYQ2 154 aa6.8□□□□□ -1.32
PTCD3-220ENST00000627371 LCE3CQ5T5A8 94 aa6.7□□□□□ -1.34
PTCD3-220ENST00000627371 LCE4AQ5TA78 99 aa6.65□□□□□ -1.34
PTCD3-220ENST00000627371 KRTAP4-9Q9BYQ8 210 aa6.63□□□□□ -1.35
PTCD3-220ENST00000627371 KRTAP5-4Q6L8H1 288 aa6.6□□□□□ -1.35
PTCD3-220ENST00000627371 PMAIP1Q13794 54 aa6.59□□□□□ -1.35
PTCD3-220ENST00000627371 LCE1DQ5T752 114 aa6.54□□□□□ -1.36
PTCD3-220ENST00000627371 KRTAP5-5Q701N2 237 aaPredicted RBP6.53□□□□□ -1.36
PTCD3-220ENST00000627371 MT4P47944 62 aa6.51□□□□□ -1.37
PTCD3-220ENST00000627371 HMCN1Q96RW7 5635 aa6.44□□□□□ -1.38
PTCD3-220ENST00000627371 PRO0628Q9UI54 55 aa6.41□□□□□ -1.38
PTCD3-220ENST00000627371 KRTAP9-6A8MVA2 160 aa6.31□□□□□ -1.4
PTCD3-220ENST00000627371 PRAC1Q96KF2 57 aa6.27□□□□□ -1.41
PTCD3-220ENST00000627371 SYNE1Q8NF91 8797 aaKnown RBP6.24□□□□□ -1.41
PTCD3-220ENST00000627371 KRTAP12-4P60329 112 aa6.24□□□□□ -1.41
PTCD3-220ENST00000627371 SPRR5A0A1B0GTR4 108 aa6.22□□□□□ -1.41
PTCD3-220ENST00000627371 KRTAP20-2Q3LI61 65 aa6.2□□□□□ -1.42
PTCD3-220ENST00000627371 MT1AP04731 61 aa6.18□□□□□ -1.42
PTCD3-220ENST00000627371 KRTAP4-2Q9BYR5 136 aa6.18□□□□□ -1.42
PTCD3-220ENST00000627371 GPR98Q8WXG9 6306 aa6.12□□□□□ -1.43
PTCD3-220ENST00000627371 KRTAP6-1Q3LI64 71 aa6.11□□□□□ -1.43
PTCD3-220ENST00000627371 AHNAK2Q8IVF2 5795 aa6.09□□□□□ -1.43
PTCD3-220ENST00000627371 KRTAP4-11Q9BYQ6 195 aa6.08□□□□□ -1.44
PTCD3-220ENST00000627371 KTN1-AS1Q86SY8 53 aa6.07□□□□□ -1.44
PTCD3-220ENST00000627371 KRTAP5-3Q6L8H2 238 aa6.01□□□□□ -1.45
PTCD3-220ENST00000627371 KRTAP5-10Q6L8G5 202 aa5.9□□□□□ -1.46
PTCD3-220ENST00000627371 H3BS24 57 aa5.87□□□□□ -1.47
PTCD3-220ENST00000627371 KRTAP5-2Q701N4 177 aa5.86□□□□□ -1.47
PTCD3-220ENST00000627371 KRTAP6-2Q3LI66 62 aa5.77□□□□□ -1.49
PTCD3-220ENST00000627371 SVIPQ8NHG7 77 aa5.75□□□□□ -1.49
PTCD3-220ENST00000627371 MT3P25713 68 aa5.63□□□□□ -1.51
PTCD3-220ENST00000627371 KRTAP5-7Q6L8G8 165 aa5.62□□□□□ -1.51
PTCD3-220ENST00000627371 OBSCNQ5VST9 7968 aa5.38□□□□□ -1.55
PTCD3-220ENST00000627371 KRTAP5-8O75690 187 aa5.38□□□□□ -1.55
PTCD3-220ENST00000627371 LUZP6Q538Z0 58 aa5.24□□□□□ -1.57
PTCD3-220ENST00000627371 KRTAP5-1Q6L8H4 278 aa5.18□□□□□ -1.58
PTCD3-220ENST00000627371 LCE1EQ5T753 118 aa5.09□□□□□ -1.59
PTCD3-220ENST00000627371 MUC5ACP98088 5654 aa5.06□□□□□ -1.6
PTCD3-220ENST00000627371 MUC5BQ9HC84 5762 aaPredicted RBP4.93□□□□□ -1.62
PTCD3-220ENST00000627371 LCE3DQ9BYE3 92 aa4.9□□□□□ -1.63
PTCD3-220ENST00000627371 AHNAKQ09666 5890 aaKnown RBP4.87□□□□□ -1.63
PTCD3-220ENST00000627371 LCE1BQ5T7P3 118 aa4.74□□□□□ -1.65
PTCD3-220ENST00000627371 LCE1CQ5T751 118 aa4.73□□□□□ -1.65
PTCD3-220ENST00000627371 LCE3EQ5T5B0 92 aa4.67□□□□□ -1.66
PTCD3-220ENST00000627371 NDUFAF8A1L188 74 aa4.53□□□□□ -1.68
PTCD3-220ENST00000627371 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-220ENST00000627371 KRTAP5-11Q6L8G4 156 aa4.26□□□□□ -1.73
PTCD3-220ENST00000627371 LCE1FQ5T754 118 aa4.05□□□□□ -1.76
PTCD3-220ENST00000627371 KRTAP21-2Q3LI59 83 aa4.03□□□□□ -1.76
PTCD3-220ENST00000627371 A0A0A0MQY5 61 aa3.75□□□□□ -1.81
PTCD3-220ENST00000627371 INE1O15225 51 aa3.71□□□□□ -1.82
PTCD3-220ENST00000627371 PRM1P04553 51 aa3.71□□□□□ -1.82
PTCD3-220ENST00000627371 PHGR1C9JFL3 82 aa3.65□□□□□ -1.83
PTCD3-220ENST00000627371 KRTAP4-4Q9BYR3 166 aa3.61□□□□□ -1.83
PTCD3-220ENST00000627371 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
PTCD3-220ENST00000627371 KRTAP21-1Q3LI58 79 aa2.58□□□□□ -2
PTCD3-220ENST00000627371 MUC16Q8WXI7 14507 aa2.4□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 82.8 ms