RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 R4GN34 69 aa2.62□□□□□ -1.99
CUX1-220ENST00000607092 MT1XP80297 61 aa2.61□□□□□ -1.99
CUX1-220ENST00000607092 ADM2Q7Z4H4 148 aa2.61□□□□□ -1.99
CUX1-220ENST00000607092 CDC42SE1Q9NRR8 79 aa2.61□□□□□ -1.99
CUX1-220ENST00000607092 SPATA8Q6RVD6 105 aa2.6□□□□□ -1.99
CUX1-220ENST00000607092 A0A1B0GU33 70 aa2.58□□□□□ -2
CUX1-220ENST00000607092 DSTQ03001 7570 aaKnown RBP2.57□□□□□ -2
CUX1-220ENST00000607092 MIR22HGQ0VDD5 57 aa2.57□□□□□ -2
CUX1-220ENST00000607092 M0QZ58 72 aa2.55□□□□□ -2
CUX1-220ENST00000607092 PMAIP1Q13794 54 aa2.53□□□□□ -2
CUX1-220ENST00000607092 HMCN1Q96RW7 5635 aa2.51□□□□□ -2.01
CUX1-220ENST00000607092 A8MU10 97 aa2.51□□□□□ -2.01
CUX1-220ENST00000607092 KRTAP10-12P60413 245 aa2.51□□□□□ -2.01
CUX1-220ENST00000607092 LINC01554Q52M75 96 aa2.51□□□□□ -2.01
CUX1-220ENST00000607092 K7ERS5 55 aa2.49□□□□□ -2.01
CUX1-220ENST00000607092 P0C880 135 aa2.49□□□□□ -2.01
CUX1-220ENST00000607092 KRTAP10-7P60409 375 aaPredicted RBP2.47□□□□□ -2.01
CUX1-220ENST00000607092 LCE1FQ5T754 118 aa2.47□□□□□ -2.01
CUX1-220ENST00000607092 KTN1-AS1Q86SY8 53 aa2.43□□□□□ -2.02
CUX1-220ENST00000607092 KRTAP13-4Q3LI77 160 aa2.42□□□□□ -2.02
CUX1-220ENST00000607092 CAMK2N1Q7Z7J9 78 aa2.4□□□□□ -2.03
CUX1-220ENST00000607092 AHNAK2Q8IVF2 5795 aa2.39□□□□□ -2.03
CUX1-220ENST00000607092 A0A0D9SG42 100 aa2.38□□□□□ -2.03
CUX1-220ENST00000607092 KRTAP19-3Q7Z4W3 81 aa2.38□□□□□ -2.03
CUX1-220ENST00000607092 KRTAP12-1P59990 96 aa2.37□□□□□ -2.03
CUX1-220ENST00000607092 PP632Q6XCG6 107 aa2.37□□□□□ -2.03
CUX1-220ENST00000607092 ROMO1P60602 79 aa2.36□□□□□ -2.03
CUX1-220ENST00000607092 SPINT4Q6UDR6 99 aa2.35□□□□□ -2.03
CUX1-220ENST00000607092 MT1EP04732 61 aa2.34□□□□□ -2.03
CUX1-220ENST00000607092 MT1GP13640 62 aa2.34□□□□□ -2.03
CUX1-220ENST00000607092 KRTAP19-7Q3SYF9 63 aa2.34□□□□□ -2.03
CUX1-220ENST00000607092 KRTAP5-3Q6L8H2 238 aa2.34□□□□□ -2.03
CUX1-220ENST00000607092 LCE3CQ5T5A8 94 aa2.31□□□□□ -2.04
CUX1-220ENST00000607092 MT4P47944 62 aa2.29□□□□□ -2.04
CUX1-220ENST00000607092 KRTAP25-1Q3LHN0 102 aa2.28□□□□□ -2.04
CUX1-220ENST00000607092 KRTAP5-10Q6L8G5 202 aa2.26□□□□□ -2.05
CUX1-220ENST00000607092 KRTAP19-5Q3LI72 72 aa2.24□□□□□ -2.05
CUX1-220ENST00000607092 KRTAP5-4Q6L8H1 288 aa2.24□□□□□ -2.05
CUX1-220ENST00000607092 MT1MQ8N339 61 aa2.24□□□□□ -2.05
CUX1-220ENST00000607092 C10orf95Q9H7T3 257 aa2.24□□□□□ -2.05
CUX1-220ENST00000607092 KRTAP5-7Q6L8G8 165 aa2.23□□□□□ -2.05
CUX1-220ENST00000607092 TNP1P09430 55 aa2.21□□□□□ -2.06
CUX1-220ENST00000607092 MT1LQ93083 61 aa2.21□□□□□ -2.06
CUX1-220ENST00000607092 AHNAKQ09666 5890 aaKnown RBP2.17□□□□□ -2.06
CUX1-220ENST00000607092 LUZP6Q538Z0 58 aa2.16□□□□□ -2.06
CUX1-220ENST00000607092 SPRR5A0A1B0GTR4 108 aa2.15□□□□□ -2.07
CUX1-220ENST00000607092 KRTAP12-4P60329 112 aa2.14□□□□□ -2.07
CUX1-220ENST00000607092 KRTAP20-2Q3LI61 65 aa2.12□□□□□ -2.07
CUX1-220ENST00000607092 LCE3EQ5T5B0 92 aa2.11□□□□□ -2.07
CUX1-220ENST00000607092 LCE3AQ5TA76 89 aa2.11□□□□□ -2.07
CUX1-220ENST00000607092 KRTAP4-3Q9BYR4 195 aa2.11□□□□□ -2.07
CUX1-220ENST00000607092 SYNE1Q8NF91 8797 aaKnown RBP2.1□□□□□ -2.07
CUX1-220ENST00000607092 LCE1EQ5T753 118 aa2.09□□□□□ -2.07
CUX1-220ENST00000607092 MUC5BQ9HC84 5762 aaPredicted RBP2.09□□□□□ -2.08
CUX1-220ENST00000607092 KRTAP12-3P60328 96 aa2.08□□□□□ -2.08
CUX1-220ENST00000607092 KRTAP5-5Q701N2 237 aaPredicted RBP2.06□□□□□ -2.08
CUX1-220ENST00000607092 MUC5ACP98088 5654 aa2.06□□□□□ -2.08
CUX1-220ENST00000607092 KRTAP9-6A8MVA2 160 aa1.97□□□□□ -2.09
CUX1-220ENST00000607092 OBSCNQ5VST9 7968 aa1.96□□□□□ -2.1
CUX1-220ENST00000607092 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
CUX1-220ENST00000607092 KRTAP5-2Q701N4 177 aa1.92□□□□□ -2.1
CUX1-220ENST00000607092 KRTAP5-8O75690 187 aa1.9□□□□□ -2.11
CUX1-220ENST00000607092 MT1AP04731 61 aa1.9□□□□□ -2.11
CUX1-220ENST00000607092 KRTAP6-1Q3LI64 71 aa1.85□□□□□ -2.11
CUX1-220ENST00000607092 KRTAP6-2Q3LI66 62 aa1.82□□□□□ -2.12
CUX1-220ENST00000607092 LCE3DQ9BYE3 92 aa1.82□□□□□ -2.12
CUX1-220ENST00000607092 KRTAP5-1Q6L8H4 278 aa1.75□□□□□ -2.13
CUX1-220ENST00000607092 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.74□□□□□ -2.13
CUX1-220ENST00000607092 INE1O15225 51 aa1.63□□□□□ -2.15
CUX1-220ENST00000607092 LCE1CQ5T751 118 aa1.55□□□□□ -2.16
CUX1-220ENST00000607092 LCE1BQ5T7P3 118 aa1.55□□□□□ -2.16
CUX1-220ENST00000607092 KRTAP4-4Q9BYR3 166 aa1.44□□□□□ -2.18
CUX1-220ENST00000607092 PHGR1C9JFL3 82 aa1.34□□□□□ -2.19
CUX1-220ENST00000607092 MUC19Q7Z5P9 8384 aa1.23□□□□□ -2.21
CUX1-220ENST00000607092 KRTAP21-2Q3LI59 83 aa1.22□□□□□ -2.21
CUX1-220ENST00000607092 PRM1P04553 51 aa1.2□□□□□ -2.22
CUX1-220ENST00000607092 KRTAP21-1Q3LI58 79 aa1.07□□□□□ -2.24
CUX1-220ENST00000607092 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 10.6 ms