RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 MT4P47944 62 aa3.37□□□□□ -1.87
SHKBP1-220ENST00000599716 MUC5ACP98088 5654 aa3.34□□□□□ -1.87
SHKBP1-220ENST00000599716 KRTAP5-11Q6L8G4 156 aa3.34□□□□□ -1.87
SHKBP1-220ENST00000599716 SPANXA2-OT1Q8N9U9 137 aa3.34□□□□□ -1.87
SHKBP1-220ENST00000599716 MUC5BQ9HC84 5762 aaPredicted RBP3.33□□□□□ -1.88
SHKBP1-220ENST00000599716 MP68P56378 58 aa3.32□□□□□ -1.88
SHKBP1-220ENST00000599716 KTN1-AS1Q86SY8 53 aa3.32□□□□□ -1.88
SHKBP1-220ENST00000599716 KRTAP19-7Q3SYF9 63 aa3.26□□□□□ -1.89
SHKBP1-220ENST00000599716 DMAC1Q96GE9 116 aa3.26□□□□□ -1.89
SHKBP1-220ENST00000599716 CHKB-CPT1BH3BT56 60 aa3.25□□□□□ -1.89
SHKBP1-220ENST00000599716 PSPHP1O15172 72 aa3.25□□□□□ -1.89
SHKBP1-220ENST00000599716 CDC42SE1Q9NRR8 79 aa3.25□□□□□ -1.89
SHKBP1-220ENST00000599716 MT1EP04732 61 aa3.23□□□□□ -1.89
SHKBP1-220ENST00000599716 KRTAP19-3Q7Z4W3 81 aa3.23□□□□□ -1.89
SHKBP1-220ENST00000599716 PRR15LQ9BU68 103 aa3.23□□□□□ -1.89
SHKBP1-220ENST00000599716 A6NED7 52 aa3.22□□□□□ -1.89
SHKBP1-220ENST00000599716 LINC01558Q9Y6Z2 57 aa3.21□□□□□ -1.9
SHKBP1-220ENST00000599716 COA5Q86WW8 74 aa3.2□□□□□ -1.9
SHKBP1-220ENST00000599716 KRTAP13-4Q3LI77 160 aa3.19□□□□□ -1.9
SHKBP1-220ENST00000599716 SPTSSBQ8NFR3 76 aa3.19□□□□□ -1.9
SHKBP1-220ENST00000599716 KRTAP23-1A1A580 65 aa3.16□□□□□ -1.9
SHKBP1-220ENST00000599716 CAMK2N1Q7Z7J9 78 aa3.16□□□□□ -1.9
SHKBP1-220ENST00000599716 KRTAP5-4Q6L8H1 288 aa3.14□□□□□ -1.91
SHKBP1-220ENST00000599716 KRTAP19-5Q3LI72 72 aa3.13□□□□□ -1.91
SHKBP1-220ENST00000599716 ACYP2P14621 99 aa3.12□□□□□ -1.91
SHKBP1-220ENST00000599716 KRTAP4-3Q9BYR4 195 aa3.12□□□□□ -1.91
SHKBP1-220ENST00000599716 A0A0D9SG42 100 aa3.1□□□□□ -1.91
SHKBP1-220ENST00000599716 MT1GP13640 62 aa3.1□□□□□ -1.91
SHKBP1-220ENST00000599716 MT1MQ8N339 61 aa3.1□□□□□ -1.91
SHKBP1-220ENST00000599716 A8MU10 97 aa3.08□□□□□ -1.92
SHKBP1-220ENST00000599716 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
SHKBP1-220ENST00000599716 SPATA8Q6RVD6 105 aa3.05□□□□□ -1.92
SHKBP1-220ENST00000599716 PP632Q6XCG6 107 aa3.05□□□□□ -1.92
SHKBP1-220ENST00000599716 MT1LQ93083 61 aa3.05□□□□□ -1.92
SHKBP1-220ENST00000599716 A0A1B0GU69 56 aa3.03□□□□□ -1.92
SHKBP1-220ENST00000599716 UQCR11O14957 56 aa3.03□□□□□ -1.92
SHKBP1-220ENST00000599716 MIR22HGQ0VDD5 57 aa3.01□□□□□ -1.93
SHKBP1-220ENST00000599716 KRTAP20-2Q3LI61 65 aa3□□□□□ -1.93
SHKBP1-220ENST00000599716 SPINT4Q6UDR6 99 aa3□□□□□ -1.93
SHKBP1-220ENST00000599716 KRTAP5-1Q6L8H4 278 aa2.99□□□□□ -1.93
SHKBP1-220ENST00000599716 PRAC1Q96KF2 57 aa2.97□□□□□ -1.93
SHKBP1-220ENST00000599716 C10orf95Q9H7T3 257 aa2.97□□□□□ -1.93
SHKBP1-220ENST00000599716 LCE3AQ5TA76 89 aa2.96□□□□□ -1.94
SHKBP1-220ENST00000599716 KRTAP12-1P59990 96 aa2.95□□□□□ -1.94
SHKBP1-220ENST00000599716 SYNE1Q8NF91 8797 aaKnown RBP2.92□□□□□ -1.94
SHKBP1-220ENST00000599716 K7ERS5 55 aa2.89□□□□□ -1.95
SHKBP1-220ENST00000599716 KRTAP5-8O75690 187 aa2.89□□□□□ -1.95
SHKBP1-220ENST00000599716 KRTAP25-1Q3LHN0 102 aa2.89□□□□□ -1.95
SHKBP1-220ENST00000599716 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
SHKBP1-220ENST00000599716 A0A1B0GU33 70 aa2.88□□□□□ -1.95
SHKBP1-220ENST00000599716 ROMO1P60602 79 aa2.85□□□□□ -1.95
SHKBP1-220ENST00000599716 KRTAP5-5Q701N2 237 aaPredicted RBP2.84□□□□□ -1.95
SHKBP1-220ENST00000599716 OBSCNQ5VST9 7968 aa2.84□□□□□ -1.96
SHKBP1-220ENST00000599716 TNP1P09430 55 aa2.82□□□□□ -1.96
SHKBP1-220ENST00000599716 KRTAP12-3P60328 96 aa2.8□□□□□ -1.96
SHKBP1-220ENST00000599716 KRTAP12-4P60329 112 aa2.8□□□□□ -1.96
SHKBP1-220ENST00000599716 KRTAP5-2Q701N4 177 aa2.72□□□□□ -1.97
SHKBP1-220ENST00000599716 KRTAP9-6A8MVA2 160 aa2.63□□□□□ -1.99
SHKBP1-220ENST00000599716 KRTAP6-1Q3LI64 71 aa2.62□□□□□ -1.99
SHKBP1-220ENST00000599716 NDUFAF8A1L188 74 aa2.61□□□□□ -1.99
SHKBP1-220ENST00000599716 MT1AP04731 61 aa2.57□□□□□ -2
SHKBP1-220ENST00000599716 MT3P25713 68 aa2.56□□□□□ -2
SHKBP1-220ENST00000599716 A0A0A0MQY5 61 aa2.55□□□□□ -2
SHKBP1-220ENST00000599716 LCE3CQ5T5A8 94 aa2.55□□□□□ -2
SHKBP1-220ENST00000599716 KRTAP6-2Q3LI66 62 aa2.54□□□□□ -2
SHKBP1-220ENST00000599716 LUZP6Q538Z0 58 aa2.53□□□□□ -2
SHKBP1-220ENST00000599716 INE1O15225 51 aa2.28□□□□□ -2.04
SHKBP1-220ENST00000599716 LCE1FQ5T754 118 aa2.25□□□□□ -2.05
SHKBP1-220ENST00000599716 LCE1BQ5T7P3 118 aa2.17□□□□□ -2.06
SHKBP1-220ENST00000599716 PHGR1C9JFL3 82 aa2.15□□□□□ -2.07
SHKBP1-220ENST00000599716 LCE1CQ5T751 118 aa2.02□□□□□ -2.09
SHKBP1-220ENST00000599716 LCE3EQ5T5B0 92 aa1.95□□□□□ -2.1
SHKBP1-220ENST00000599716 MUC19Q7Z5P9 8384 aa1.82□□□□□ -2.12
SHKBP1-220ENST00000599716 LCE3DQ9BYE3 92 aa1.78□□□□□ -2.12
SHKBP1-220ENST00000599716 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
SHKBP1-220ENST00000599716 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
SHKBP1-220ENST00000599716 PRM1P04553 51 aa1.43□□□□□ -2.18
SHKBP1-220ENST00000599716 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 57.1 ms