RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 K7ERS5 55 aa4.7□□□□□ -1.66
ZNF540-209ENST00000590588 PRO2289Q9P1D8 64 aa4.67□□□□□ -1.66
ZNF540-209ENST00000590588 M0QZ58 72 aa4.66□□□□□ -1.66
ZNF540-209ENST00000590588 DSTQ03001 7570 aaKnown RBP4.65□□□□□ -1.67
ZNF540-209ENST00000590588 CRIPTQ9P021 101 aa4.63□□□□□ -1.67
ZNF540-209ENST00000590588 KRTAP12-2P59991 146 aa4.59□□□□□ -1.67
ZNF540-209ENST00000590588 ADM2Q7Z4H4 148 aa4.58□□□□□ -1.68
ZNF540-209ENST00000590588 MT1XP80297 61 aa4.57□□□□□ -1.68
ZNF540-209ENST00000590588 P0C880 135 aa4.56□□□□□ -1.68
ZNF540-209ENST00000590588 KRTAP13-4Q3LI77 160 aa4.52□□□□□ -1.69
ZNF540-209ENST00000590588 LINC01554Q52M75 96 aa4.51□□□□□ -1.69
ZNF540-209ENST00000590588 PLAC4Q8WY50 150 aa4.48□□□□□ -1.69
ZNF540-209ENST00000590588 ROMO1P60602 79 aa4.47□□□□□ -1.69
ZNF540-209ENST00000590588 R4GN34 69 aa4.47□□□□□ -1.69
ZNF540-209ENST00000590588 KRTAP12-1P59990 96 aa4.43□□□□□ -1.7
ZNF540-209ENST00000590588 PRAC1Q96KF2 57 aa4.42□□□□□ -1.7
ZNF540-209ENST00000590588 A0A0D9SG42 100 aa4.41□□□□□ -1.7
ZNF540-209ENST00000590588 KRTAP25-1Q3LHN0 102 aa4.38□□□□□ -1.71
ZNF540-209ENST00000590588 KRTAP10-7P60409 375 aaPredicted RBP4.36□□□□□ -1.71
ZNF540-209ENST00000590588 KRTAP10-12P60413 245 aa4.36□□□□□ -1.71
ZNF540-209ENST00000590588 KRTAP5-10Q6L8G5 202 aa4.35□□□□□ -1.71
ZNF540-209ENST00000590588 SPINT4Q6UDR6 99 aa4.34□□□□□ -1.71
ZNF540-209ENST00000590588 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
ZNF540-209ENST00000590588 AHNAK2Q8IVF2 5795 aa4.29□□□□□ -1.72
ZNF540-209ENST00000590588 MT4P47944 62 aa4.28□□□□□ -1.72
ZNF540-209ENST00000590588 KRTAP5-7Q6L8G8 165 aa4.26□□□□□ -1.73
ZNF540-209ENST00000590588 PP632Q6XCG6 107 aa4.2□□□□□ -1.74
ZNF540-209ENST00000590588 CAMK2N1Q7Z7J9 78 aa4.19□□□□□ -1.74
ZNF540-209ENST00000590588 A0A0A0MQY5 61 aa4.18□□□□□ -1.74
ZNF540-209ENST00000590588 KRTAP19-3Q7Z4W3 81 aa4.18□□□□□ -1.74
ZNF540-209ENST00000590588 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.75
ZNF540-209ENST00000590588 C10orf95Q9H7T3 257 aa4.15□□□□□ -1.75
ZNF540-209ENST00000590588 KRTAP19-7Q3SYF9 63 aa4.1□□□□□ -1.75
ZNF540-209ENST00000590588 MT1EP04732 61 aa4.09□□□□□ -1.75
ZNF540-209ENST00000590588 TNP1P09430 55 aa4.09□□□□□ -1.75
ZNF540-209ENST00000590588 KRTAP5-4Q6L8H1 288 aa4.07□□□□□ -1.76
ZNF540-209ENST00000590588 MT1GP13640 62 aa4.05□□□□□ -1.76
ZNF540-209ENST00000590588 MT1MQ8N339 61 aa3.93□□□□□ -1.78
ZNF540-209ENST00000590588 KRTAP20-2Q3LI61 65 aa3.88□□□□□ -1.79
ZNF540-209ENST00000590588 KRTAP19-5Q3LI72 72 aa3.86□□□□□ -1.79
ZNF540-209ENST00000590588 KRTAP4-3Q9BYR4 195 aa3.85□□□□□ -1.79
ZNF540-209ENST00000590588 NDUFAF8A1L188 74 aa3.83□□□□□ -1.8
ZNF540-209ENST00000590588 MT1LQ93083 61 aa3.82□□□□□ -1.8
ZNF540-209ENST00000590588 LCE3AQ5TA76 89 aa3.76□□□□□ -1.81
ZNF540-209ENST00000590588 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
ZNF540-209ENST00000590588 LUZP6Q538Z0 58 aa3.71□□□□□ -1.82
ZNF540-209ENST00000590588 MT3P25713 68 aa3.7□□□□□ -1.82
ZNF540-209ENST00000590588 KRTAP12-3P60328 96 aa3.67□□□□□ -1.82
ZNF540-209ENST00000590588 KRTAP5-5Q701N2 237 aaPredicted RBP3.66□□□□□ -1.82
ZNF540-209ENST00000590588 MUC5ACP98088 5654 aa3.65□□□□□ -1.82
ZNF540-209ENST00000590588 SYNE1Q8NF91 8797 aaKnown RBP3.65□□□□□ -1.83
ZNF540-209ENST00000590588 AHNAKQ09666 5890 aaKnown RBP3.64□□□□□ -1.83
ZNF540-209ENST00000590588 MUC5BQ9HC84 5762 aaPredicted RBP3.63□□□□□ -1.83
ZNF540-209ENST00000590588 KRTAP5-8O75690 187 aa3.59□□□□□ -1.83
ZNF540-209ENST00000590588 KRTAP5-2Q701N4 177 aa3.47□□□□□ -1.85
ZNF540-209ENST00000590588 LCE3CQ5T5A8 94 aa3.44□□□□□ -1.86
ZNF540-209ENST00000590588 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.42□□□□□ -1.86
ZNF540-209ENST00000590588 OBSCNQ5VST9 7968 aa3.42□□□□□ -1.86
ZNF540-209ENST00000590588 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
ZNF540-209ENST00000590588 LCE1EQ5T753 118 aa3.32□□□□□ -1.88
ZNF540-209ENST00000590588 INE1O15225 51 aa3.31□□□□□ -1.88
ZNF540-209ENST00000590588 KRTAP6-1Q3LI64 71 aa3.26□□□□□ -1.89
ZNF540-209ENST00000590588 KRTAP5-11Q6L8G4 156 aa3.25□□□□□ -1.89
ZNF540-209ENST00000590588 MT1AP04731 61 aa3.24□□□□□ -1.89
ZNF540-209ENST00000590588 KRTAP6-2Q3LI66 62 aa3.22□□□□□ -1.89
ZNF540-209ENST00000590588 KRTAP5-1Q6L8H4 278 aa3.21□□□□□ -1.9
ZNF540-209ENST00000590588 KRTAP9-6A8MVA2 160 aa3.17□□□□□ -1.9
ZNF540-209ENST00000590588 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
ZNF540-209ENST00000590588 LCE3EQ5T5B0 92 aa2.85□□□□□ -1.95
ZNF540-209ENST00000590588 LCE1BQ5T7P3 118 aa2.77□□□□□ -1.97
ZNF540-209ENST00000590588 LCE1CQ5T751 118 aa2.7□□□□□ -1.98
ZNF540-209ENST00000590588 LCE3DQ9BYE3 92 aa2.63□□□□□ -1.99
ZNF540-209ENST00000590588 PHGR1C9JFL3 82 aa2.57□□□□□ -2
ZNF540-209ENST00000590588 PRM1P04553 51 aa2.27□□□□□ -2.05
ZNF540-209ENST00000590588 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
ZNF540-209ENST00000590588 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
ZNF540-209ENST00000590588 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
ZNF540-209ENST00000590588 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 58.6 ms