RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CEP250Q9BV73 2442 aa-2.19□□□□□ -2.76
SMCHD1-209ENST00000583441 LOC400499M0QZD8 3231 aa-2.2□□□□□ -2.76
SMCHD1-209ENST00000583441 MKI67P46013 3256 aaKnown RBP-2.21□□□□□ -2.76
SMCHD1-209ENST00000583441 SZT2Q5T011 3432 aa-2.21□□□□□ -2.76
SMCHD1-209ENST00000583441 MROH2AA6NES4 1674 aa-2.22□□□□□ -2.76
SMCHD1-209ENST00000583441 LMO7Q8WWI1 1683 aa-2.22□□□□□ -2.76
SMCHD1-209ENST00000583441 SYCP2Q9BX26 1530 aa-2.22□□□□□ -2.76
SMCHD1-209ENST00000583441 DNAH14Q0VDD8 3507 aa-2.23□□□□□ -2.77
SMCHD1-209ENST00000583441 AGLP35573 1532 aa-2.24□□□□□ -2.77
SMCHD1-209ENST00000583441 TFF3Q07654 80 aa-2.27□□□□□ -2.77
SMCHD1-209ENST00000583441 PRXQ9BXM0 1461 aa-2.28□□□□□ -2.77
SMCHD1-209ENST00000583441 USP34Q70CQ2 3546 aa-2.29□□□□□ -2.78
SMCHD1-209ENST00000583441 VCANP13611 3396 aa-2.29□□□□□ -2.78
SMCHD1-209ENST00000583441 SMIM2Q9BVW6 85 aa-2.3□□□□□ -2.78
SMCHD1-209ENST00000583441 CFAP47Q6ZTR5 3102 aa-2.31□□□□□ -2.78
SMCHD1-209ENST00000583441 ABCA5Q8WWZ7 1642 aa-2.32□□□□□ -2.78
SMCHD1-209ENST00000583441 ADCY10Q96PN6 1610 aa-2.37□□□□□ -2.79
SMCHD1-209ENST00000583441 NRXN3Q9Y4C0 1643 aa-2.38□□□□□ -2.79
SMCHD1-209ENST00000583441 SMIM31A0A1B0GVY4 71 aa-2.38□□□□□ -2.79
SMCHD1-209ENST00000583441 CMC2Q9NRP2 79 aa-2.4□□□□□ -2.79
SMCHD1-209ENST00000583441 UNC80Q8N2C7 3258 aa-2.4□□□□□ -2.79
SMCHD1-209ENST00000583441 TRPM2O94759 1503 aa-2.41□□□□□ -2.79
SMCHD1-209ENST00000583441 TTTY10Q9BZA0 68 aa-2.43□□□□□ -2.8
SMCHD1-209ENST00000583441 CLTCL1P53675 1640 aa-2.44□□□□□ -2.8
SMCHD1-209ENST00000583441 DDX60Q8IY21 1712 aaKnown RBP-2.45□□□□□ -2.8
SMCHD1-209ENST00000583441 ABCC8Q09428 1581 aa-2.46□□□□□ -2.8
SMCHD1-209ENST00000583441 KRTAP19-2Q3LHN2 52 aa-2.47□□□□□ -2.8
SMCHD1-209ENST00000583441 DNAH12Q6ZR08 3092 aa-2.48□□□□□ -2.81
SMCHD1-209ENST00000583441 CENPFP49454 3210 aa-2.49□□□□□ -2.81
SMCHD1-209ENST00000583441 FANCD2Q9BXW9 1451 aa-2.5□□□□□ -2.81
SMCHD1-209ENST00000583441 IQGAP1P46940 1657 aa-2.5□□□□□ -2.81
SMCHD1-209ENST00000583441 ASPMQ8IZT6 3477 aa-2.52□□□□□ -2.81
SMCHD1-209ENST00000583441 NFAT5O94916 1531 aa-2.55□□□□□ -2.82
SMCHD1-209ENST00000583441 NDUFA1O15239 70 aa-2.56□□□□□ -2.82
SMCHD1-209ENST00000583441 DEFB133Q30KQ1 61 aa-2.57□□□□□ -2.82
SMCHD1-209ENST00000583441 RHPN1-AS1Q9BWJ2 59 aa-2.57□□□□□ -2.82
SMCHD1-209ENST00000583441 XIRP2A4UGR9 3374 aa-2.57□□□□□ -2.82
SMCHD1-209ENST00000583441 TOMM7Q9P0U1 55 aa-2.6□□□□□ -2.83
SMCHD1-209ENST00000583441 BRCA2P51587 3418 aa-2.61□□□□□ -2.83
SMCHD1-209ENST00000583441 LINC01590Q5TEZ4 76 aa-2.62□□□□□ -2.83
SMCHD1-209ENST00000583441 CDH23Q9H251 3354 aa-2.64□□□□□ -2.83
SMCHD1-209ENST00000583441 HTN1P15515 57 aa-2.65□□□□□ -2.83
SMCHD1-209ENST00000583441 A0A096LNI7 61 aa-2.68□□□□□ -2.84
SMCHD1-209ENST00000583441 CD52P31358 61 aa-2.68□□□□□ -2.84
SMCHD1-209ENST00000583441 ERICH3Q5RHP9 1530 aa-2.69□□□□□ -2.84
SMCHD1-209ENST00000583441 VPS13AQ96RL7 3174 aa-2.7□□□□□ -2.84
SMCHD1-209ENST00000583441 DUOX1Q9NRD9 1551 aa-2.8□□□□□ -2.86
SMCHD1-209ENST00000583441 SNRPGP15A8MWD9 76 aa-2.82□□□□□ -2.86
SMCHD1-209ENST00000583441 UTRNP46939 3433 aa-2.83□□□□□ -2.86
SMCHD1-209ENST00000583441 DEFB124Q8NES8 71 aa-2.84□□□□□ -2.86
SMCHD1-209ENST00000583441 RPL39P62891 51 aaKnown RBP-2.88□□□□□ -2.87
SMCHD1-209ENST00000583441 SAMD9LQ8IVG5 1584 aa-2.88□□□□□ -2.87
SMCHD1-209ENST00000583441 DEFB104AQ8WTQ1 72 aa-2.9□□□□□ -2.87
SMCHD1-209ENST00000583441 TOP2AP11388 1531 aaKnown RBP-2.91□□□□□ -2.88
SMCHD1-209ENST00000583441 RPL39LQ96EH5 51 aaKnown RBP-3□□□□□ -2.89
SMCHD1-209ENST00000583441 ATP7AQ04656 1500 aa-3□□□□□ -2.89
SMCHD1-209ENST00000583441 MROH2BQ7Z745 1585 aa-3.02□□□□□ -2.89
SMCHD1-209ENST00000583441 GOLGB1Q14789 3259 aaKnown RBP-3.03□□□□□ -2.89
SMCHD1-209ENST00000583441 LINC01556Q5JQF7 62 aa-3.04□□□□□ -2.9
SMCHD1-209ENST00000583441 H3BUX3 64 aa-3.12□□□□□ -2.91
SMCHD1-209ENST00000583441 IQGAP2Q13576 1575 aa-3.12□□□□□ -2.91
SMCHD1-209ENST00000583441 TOMM5Q8N4H5 51 aa-3.16□□□□□ -2.92
SMCHD1-209ENST00000583441 K7EIM0 57 aa-3.35□□□□□ -2.95
SMCHD1-209ENST00000583441 APELAP0DMC3 54 aa-3.35□□□□□ -2.95
SMCHD1-209ENST00000583441 A0A096LPF7 62 aa-3.38□□□□□ -2.95
SMCHD1-209ENST00000583441 ARHGAP5-AS1Q96IT6 56 aa-3.43□□□□□ -2.96
SMCHD1-209ENST00000583441 PRCDQ00LT1 54 aa-3.46□□□□□ -2.96
SMCHD1-209ENST00000583441 TMEM167AQ8TBQ9 72 aa-3.52□□□□□ -2.97
SMCHD1-209ENST00000583441 HTN3P15516 51 aa-3.56□□□□□ -2.98
SMCHD1-209ENST00000583441 GCC2Q8IWJ2 1684 aa-3.64□□□□□ -2.99
SMCHD1-209ENST00000583441 Q9Y3F1 56 aa-3.66□□□□□ -3
SMCHD1-209ENST00000583441 SNRPGP62308 76 aaKnown RBP-3.73□□□□□ -3.01
SMCHD1-209ENST00000583441 H3BSH0 61 aa-3.77□□□□□ -3.01
SMCHD1-209ENST00000583441 RPL39P5Q59GN2 51 aa-3.79□□□□□ -3.02
SMCHD1-209ENST00000583441 DEFB108AA8MXU0 73 aa-3.84□□□□□ -3.02
SMCHD1-209ENST00000583441 COX14Q96I36 57 aa-3.9□□□□□ -3.03
SMCHD1-209ENST00000583441 DEFB108BQ8NET1 73 aa-4.14□□□□□ -3.07
SMCHD1-209ENST00000583441 STATHP02808 62 aa-4.16□□□□□ -3.08
Retrieved 78 of 20,778 RNA–protein pairs in 161.8 ms