RNA–Protein interactions for RNA: ENST00000580222.5

LIMD2-209, Transcript of LIM domain containing 2, humanhuman

TSL 3

Gene LIMD2, Length 846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-209ENST00000580222 CDC42SE1Q9NRR8 79 aa7.47□□□□□ -1.21
LIMD2-209ENST00000580222 C10orf95Q9H7T3 257 aa7.44□□□□□ -1.22
LIMD2-209ENST00000580222 KRTAP5-10Q6L8G5 202 aa7.41□□□□□ -1.22
LIMD2-209ENST00000580222 LCE5AQ5TCM9 118 aa7.4□□□□□ -1.22
LIMD2-209ENST00000580222 TNP1P09430 55 aa7.36□□□□□ -1.23
LIMD2-209ENST00000580222 MT4P47944 62 aa7.35□□□□□ -1.23
LIMD2-209ENST00000580222 KRTAP19-3Q7Z4W3 81 aa7.24□□□□□ -1.25
LIMD2-209ENST00000580222 KRTAP19-7Q3SYF9 63 aa7.23□□□□□ -1.25
LIMD2-209ENST00000580222 LCE4AQ5TA78 99 aa7.23□□□□□ -1.25
LIMD2-209ENST00000580222 BRK1Q8WUW1 75 aa7.22□□□□□ -1.25
LIMD2-209ENST00000580222 KRTAP5-7Q6L8G8 165 aa7.19□□□□□ -1.26
LIMD2-209ENST00000580222 MT1EP04732 61 aa7.18□□□□□ -1.26
LIMD2-209ENST00000580222 KRTAP25-1Q3LHN0 102 aa7.18□□□□□ -1.26
LIMD2-209ENST00000580222 LCE3AQ5TA76 89 aa7.14□□□□□ -1.27
LIMD2-209ENST00000580222 ROMO1P60602 79 aa7.13□□□□□ -1.27
LIMD2-209ENST00000580222 KRTAP4-6Q9BYQ5 205 aa7.11□□□□□ -1.27
LIMD2-209ENST00000580222 KRTAP5-3Q6L8H2 238 aa7.04□□□□□ -1.28
LIMD2-209ENST00000580222 KRTAP5-4Q6L8H1 288 aa7.03□□□□□ -1.28
LIMD2-209ENST00000580222 KRTAP19-5Q3LI72 72 aa7.02□□□□□ -1.29
LIMD2-209ENST00000580222 MT1GP13640 62 aa6.96□□□□□ -1.3
LIMD2-209ENST00000580222 SPRR5A0A1B0GTR4 108 aa6.94□□□□□ -1.3
LIMD2-209ENST00000580222 KRTAP23-1A1A580 65 aa6.9□□□□□ -1.3
LIMD2-209ENST00000580222 MT1MQ8N339 61 aa6.89□□□□□ -1.31
LIMD2-209ENST00000580222 KRTAP4-3Q9BYR4 195 aa6.87□□□□□ -1.31
LIMD2-209ENST00000580222 KRTAP12-3P60328 96 aa6.85□□□□□ -1.31
LIMD2-209ENST00000580222 PP632Q6XCG6 107 aa6.82□□□□□ -1.32
LIMD2-209ENST00000580222 PMAIP1Q13794 54 aa6.79□□□□□ -1.32
LIMD2-209ENST00000580222 MT1LQ93083 61 aa6.75□□□□□ -1.33
LIMD2-209ENST00000580222 PRO0628Q9UI54 55 aa6.74□□□□□ -1.33
LIMD2-209ENST00000580222 KRTAP20-2Q3LI61 65 aa6.69□□□□□ -1.34
LIMD2-209ENST00000580222 KRTAP15-1Q3LI76 137 aa6.57□□□□□ -1.36
LIMD2-209ENST00000580222 SVIPQ8NHG7 77 aa6.56□□□□□ -1.36
LIMD2-209ENST00000580222 AHNAKQ09666 5890 aaKnown RBP6.53□□□□□ -1.36
LIMD2-209ENST00000580222 KRTAP4-7Q9BYR0 210 aa6.47□□□□□ -1.37
LIMD2-209ENST00000580222 KRTAP19-4Q3LI73 84 aa6.45□□□□□ -1.38
LIMD2-209ENST00000580222 PRAC1Q96KF2 57 aa6.43□□□□□ -1.38
LIMD2-209ENST00000580222 MUC5ACP98088 5654 aa6.42□□□□□ -1.38
LIMD2-209ENST00000580222 SYNE1Q8NF91 8797 aaKnown RBP6.41□□□□□ -1.38
LIMD2-209ENST00000580222 KRTAP5-5Q701N2 237 aaPredicted RBP6.41□□□□□ -1.38
LIMD2-209ENST00000580222 MUC5BQ9HC84 5762 aaPredicted RBP6.37□□□□□ -1.39
LIMD2-209ENST00000580222 LCE3CQ5T5A8 94 aa6.35□□□□□ -1.39
LIMD2-209ENST00000580222 KTN1-AS1Q86SY8 53 aa6.34□□□□□ -1.39
LIMD2-209ENST00000580222 KRTAP12-4P60329 112 aa6.33□□□□□ -1.4
LIMD2-209ENST00000580222 KRTAP4-11Q9BYQ6 195 aa6.29□□□□□ -1.4
LIMD2-209ENST00000580222 LOC100996750A0A140TA64 210 aa6.16□□□□□ -1.42
LIMD2-209ENST00000580222 KRTAP5-8O75690 187 aa6.16□□□□□ -1.42
LIMD2-209ENST00000580222 KRTAP5-2Q701N4 177 aa6.02□□□□□ -1.45
LIMD2-209ENST00000580222 KRTAP9-6A8MVA2 160 aa5.96□□□□□ -1.46
LIMD2-209ENST00000580222 OBSCNQ5VST9 7968 aa5.95□□□□□ -1.46
LIMD2-209ENST00000580222 KRTAP9-9Q9BYP9 154 aa5.87□□□□□ -1.47
LIMD2-209ENST00000580222 MT1AP04731 61 aa5.76□□□□□ -1.49
LIMD2-209ENST00000580222 KRTAP6-1Q3LI64 71 aa5.76□□□□□ -1.49
LIMD2-209ENST00000580222 KRTAP6-2Q3LI66 62 aa5.65□□□□□ -1.5
LIMD2-209ENST00000580222 KRTAP9-4Q9BYQ2 154 aa5.59□□□□□ -1.51
LIMD2-209ENST00000580222 KRTAP5-1Q6L8H4 278 aa5.57□□□□□ -1.52
LIMD2-209ENST00000580222 LUZP6Q538Z0 58 aa5.35□□□□□ -1.55
LIMD2-209ENST00000580222 MT3P25713 68 aa5.24□□□□□ -1.57
LIMD2-209ENST00000580222 LCE1EQ5T753 118 aa4.96□□□□□ -1.62
LIMD2-209ENST00000580222 KRTAP4-2Q9BYR5 136 aa4.86□□□□□ -1.63
LIMD2-209ENST00000580222 NDUFAF8A1L188 74 aa4.81□□□□□ -1.64
LIMD2-209ENST00000580222 LCE1BQ5T7P3 118 aa4.8□□□□□ -1.64
LIMD2-209ENST00000580222 KRTAP4-12Q9BQ66 201 aa4.73□□□□□ -1.65
LIMD2-209ENST00000580222 LCE3DQ9BYE3 92 aa4.69□□□□□ -1.66
LIMD2-209ENST00000580222 LCE1CQ5T751 118 aa4.62□□□□□ -1.67
LIMD2-209ENST00000580222 H3BS24 57 aa4.52□□□□□ -1.69
LIMD2-209ENST00000580222 LCE3EQ5T5B0 92 aa4.5□□□□□ -1.69
LIMD2-209ENST00000580222 KRTAP5-11Q6L8G4 156 aa4.43□□□□□ -1.7
LIMD2-209ENST00000580222 PHGR1C9JFL3 82 aa4.32□□□□□ -1.72
LIMD2-209ENST00000580222 LCE1FQ5T754 118 aa4.27□□□□□ -1.73
LIMD2-209ENST00000580222 A0A0A0MQY5 61 aa4.1□□□□□ -1.75
LIMD2-209ENST00000580222 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.1□□□□□ -1.75
LIMD2-209ENST00000580222 INE1O15225 51 aa3.95□□□□□ -1.78
LIMD2-209ENST00000580222 KRTAP21-2Q3LI59 83 aa3.81□□□□□ -1.8
LIMD2-209ENST00000580222 MUC19Q7Z5P9 8384 aa3.73□□□□□ -1.81
LIMD2-209ENST00000580222 PRM1P04553 51 aa3.69□□□□□ -1.82
LIMD2-209ENST00000580222 KRTAP4-4Q9BYR3 166 aa3.66□□□□□ -1.82
LIMD2-209ENST00000580222 KRTAP21-1Q3LI58 79 aa3.25□□□□□ -1.89
LIMD2-209ENST00000580222 MUC16Q8WXI7 14507 aa2.59□□□□□ -2
Retrieved 78 of 20,778 RNA–protein pairs in 54.5 ms