RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TRBV6-1A0A0K0K1D8 114 aa2.01□□□□□ -2.09
VPS53-219ENST00000576019 SPINK1P00995 79 aa2□□□□□ -2.09
VPS53-219ENST00000576019 ARHGAP5-AS1Q96IT6 56 aa2□□□□□ -2.09
VPS53-219ENST00000576019 C9orf92A6NGG3 77 aa1.99□□□□□ -2.09
VPS53-219ENST00000576019 A0A1B0GU69 56 aa1.97□□□□□ -2.09
VPS53-219ENST00000576019 RPS29P62273 56 aaKnown RBP1.96□□□□□ -2.1
VPS53-219ENST00000576019 KRTAP20-2Q3LI61 65 aa1.93□□□□□ -2.1
VPS53-219ENST00000576019 TOMM5Q8N4H5 51 aa1.93□□□□□ -2.1
VPS53-219ENST00000576019 COX7BP24311 80 aa1.92□□□□□ -2.1
VPS53-219ENST00000576019 UBL5Q9BZL1 73 aa1.92□□□□□ -2.1
VPS53-219ENST00000576019 FCER1GP30273 86 aa1.91□□□□□ -2.1
VPS53-219ENST00000576019 KRTAP19-8Q3LI54 63 aa1.91□□□□□ -2.1
VPS53-219ENST00000576019 K7EMI3 77 aa1.9□□□□□ -2.11
VPS53-219ENST00000576019 SSBP3-AS1Q7Z2R9 100 aa1.9□□□□□ -2.11
VPS53-219ENST00000576019 NMES1Q9C002 83 aa1.9□□□□□ -2.11
VPS53-219ENST00000576019 KCNQ1DNQ9H478 68 aa1.86□□□□□ -2.11
VPS53-219ENST00000576019 IGIPA6NJ69 53 aa1.85□□□□□ -2.11
VPS53-219ENST00000576019 SYNE1Q8NF91 8797 aaKnown RBP1.84□□□□□ -2.11
VPS53-219ENST00000576019 ARL14EPLP0DKL9 152 aa1.84□□□□□ -2.11
VPS53-219ENST00000576019 ETDCA0A1B0GVM5 59 aa1.81□□□□□ -2.12
VPS53-219ENST00000576019 SMIM27A0A1W2PRY6 76 aa1.81□□□□□ -2.12
VPS53-219ENST00000576019 I3L3M4 83 aa1.81□□□□□ -2.12
VPS53-219ENST00000576019 PLNP26678 52 aa1.81□□□□□ -2.12
VPS53-219ENST00000576019 SERF2P84101 59 aa1.81□□□□□ -2.12
VPS53-219ENST00000576019 A0A0D9SG42 100 aa1.8□□□□□ -2.12
VPS53-219ENST00000576019 LINC01546A6NGU7 62 aa1.78□□□□□ -2.12
VPS53-219ENST00000576019 SPRR2GQ9BYE4 73 aa1.77□□□□□ -2.13
VPS53-219ENST00000576019 C10orf95Q9H7T3 257 aa1.76□□□□□ -2.13
VPS53-219ENST00000576019 CRIP1P50238 77 aa1.75□□□□□ -2.13
VPS53-219ENST00000576019 PRLHP81277 87 aa1.75□□□□□ -2.13
VPS53-219ENST00000576019 KRTAP19-3Q7Z4W3 81 aa1.73□□□□□ -2.13
VPS53-219ENST00000576019 CRIPTQ9P021 101 aa1.73□□□□□ -2.13
VPS53-219ENST00000576019 TP53AIP1Q9HCN2 124 aa1.72□□□□□ -2.13
VPS53-219ENST00000576019 C6orf48Q9UBA6 75 aa1.72□□□□□ -2.13
VPS53-219ENST00000576019 H0YGX0 51 aa1.71□□□□□ -2.14
VPS53-219ENST00000576019 K7EQZ3 153 aa1.71□□□□□ -2.14
VPS53-219ENST00000576019 MT1XP80297 61 aa1.71□□□□□ -2.14
VPS53-219ENST00000576019 MRPL34Q9BQ48 92 aaKnown RBP1.69□□□□□ -2.14
VPS53-219ENST00000576019 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
VPS53-219ENST00000576019 NDUFA1O15239 70 aa1.68□□□□□ -2.14
VPS53-219ENST00000576019 CDKN2A-AS1Q9UH64 79 aa1.68□□□□□ -2.14
VPS53-219ENST00000576019 CNFNQ9BYD5 112 aa1.66□□□□□ -2.14
VPS53-219ENST00000576019 LINC00158P58513 81 aa1.65□□□□□ -2.15
VPS53-219ENST00000576019 Q8IZM0 81 aa1.65□□□□□ -2.15
VPS53-219ENST00000576019 H0YAA0 97 aa1.6□□□□□ -2.15
VPS53-219ENST00000576019 PHGR1C9JFL3 82 aa1.59□□□□□ -2.15
VPS53-219ENST00000576019 TMEM167BQ9NRX6 74 aa1.59□□□□□ -2.15
VPS53-219ENST00000576019 MT1GP13640 62 aa1.58□□□□□ -2.16
VPS53-219ENST00000576019 LINC00308Q8TCZ7 52 aa1.58□□□□□ -2.16
VPS53-219ENST00000576019 MT1EP04732 61 aa1.57□□□□□ -2.16
VPS53-219ENST00000576019 M0QY20 66 aa1.56□□□□□ -2.16
VPS53-219ENST00000576019 IAPPP10997 89 aa1.56□□□□□ -2.16
VPS53-219ENST00000576019 SPRR1AP35321 89 aa1.56□□□□□ -2.16
VPS53-219ENST00000576019 KRTAP19-7Q3SYF9 63 aa1.55□□□□□ -2.16
VPS53-219ENST00000576019 MT1MQ8N339 61 aa1.55□□□□□ -2.16
VPS53-219ENST00000576019 H1FX-AS1Q4G0G2 97 aa1.51□□□□□ -2.17
VPS53-219ENST00000576019 SMIM2Q9BVW6 85 aa1.5□□□□□ -2.17
VPS53-219ENST00000576019 SPRR1BP22528 89 aa1.49□□□□□ -2.17
VPS53-219ENST00000576019 WFDC13Q8IUB5 93 aa1.48□□□□□ -2.17
VPS53-219ENST00000576019 DEFB105AQ8NG35 78 aa1.47□□□□□ -2.17
VPS53-219ENST00000576019 KRTAP21-2Q3LI59 83 aa1.46□□□□□ -2.18
VPS53-219ENST00000576019 RPL39LQ96EH5 51 aaKnown RBP1.37□□□□□ -2.19
VPS53-219ENST00000576019 TOMM7Q9P0U1 55 aa1.37□□□□□ -2.19
VPS53-219ENST00000576019 MT1LQ93083 61 aa1.35□□□□□ -2.19
VPS53-219ENST00000576019 IGLV5-48A0A075B6I7 105 aa1.34□□□□□ -2.19
VPS53-219ENST00000576019 POLR2KP53803 58 aaKnown RBP1.3□□□□□ -2.2
VPS53-219ENST00000576019 S4R3F8 94 aa1.3□□□□□ -2.2
VPS53-219ENST00000576019 KRTAP6-2Q3LI66 62 aa1.28□□□□□ -2.2
VPS53-219ENST00000576019 MMP24-AS1A0A0U1RRL7 71 aa1.26□□□□□ -2.21
VPS53-219ENST00000576019 RPL39P62891 51 aaKnown RBP1.26□□□□□ -2.21
VPS53-219ENST00000576019 KRTAP19-5Q3LI72 72 aa1.25□□□□□ -2.21
VPS53-219ENST00000576019 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
VPS53-219ENST00000576019 KRTAP6-1Q3LI64 71 aa1.18□□□□□ -2.22
VPS53-219ENST00000576019 MT1AP04731 61 aa1.13□□□□□ -2.23
VPS53-219ENST00000576019 M0QZ58 72 aa1□□□□□ -2.25
VPS53-219ENST00000576019 PRM1P04553 51 aa0.97□□□□□ -2.25
VPS53-219ENST00000576019 TNP1P09430 55 aa0.88□□□□□ -2.27
VPS53-219ENST00000576019 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 106.6 ms