RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 CHKB-CPT1BH3BT56 60 aa3.1□□□□□ -1.91
CHD3-213ENST00000571249 SPTSSBQ8NFR3 76 aa3.08□□□□□ -1.92
CHD3-213ENST00000571249 KRTAP19-8Q3LI54 63 aa3.07□□□□□ -1.92
CHD3-213ENST00000571249 PRR15LQ9BU68 103 aa3.07□□□□□ -1.92
CHD3-213ENST00000571249 MT4P47944 62 aa3.06□□□□□ -1.92
CHD3-213ENST00000571249 KRTAP25-1Q3LHN0 102 aa3.04□□□□□ -1.92
CHD3-213ENST00000571249 A0A1B0GU69 56 aa3.02□□□□□ -1.93
CHD3-213ENST00000571249 H1FX-AS1Q4G0G2 97 aa3.02□□□□□ -1.93
CHD3-213ENST00000571249 AHNAKQ09666 5890 aaKnown RBP3.02□□□□□ -1.93
CHD3-213ENST00000571249 BRK1Q8WUW1 75 aa3.01□□□□□ -1.93
CHD3-213ENST00000571249 CDC42SE1Q9NRR8 79 aa3□□□□□ -1.93
CHD3-213ENST00000571249 R4GN34 69 aa3□□□□□ -1.93
CHD3-213ENST00000571249 A8MU10 97 aa2.99□□□□□ -1.93
CHD3-213ENST00000571249 S4R3F8 94 aa2.99□□□□□ -1.93
CHD3-213ENST00000571249 SPATA8Q6RVD6 105 aa2.98□□□□□ -1.93
CHD3-213ENST00000571249 SPRR2GQ9BYE4 73 aa2.98□□□□□ -1.93
CHD3-213ENST00000571249 UQCR11O14957 56 aa2.97□□□□□ -1.93
CHD3-213ENST00000571249 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
CHD3-213ENST00000571249 H0YAA0 97 aa2.93□□□□□ -1.94
CHD3-213ENST00000571249 MIR22HGQ0VDD5 57 aa2.93□□□□□ -1.94
CHD3-213ENST00000571249 CSAG1Q6PB30 78 aa2.93□□□□□ -1.94
CHD3-213ENST00000571249 MUC5ACP98088 5654 aa2.88□□□□□ -1.95
CHD3-213ENST00000571249 P0C880 135 aa2.86□□□□□ -1.95
CHD3-213ENST00000571249 KRTAP12-2P59991 146 aa2.86□□□□□ -1.95
CHD3-213ENST00000571249 PRO2289Q9P1D8 64 aa2.86□□□□□ -1.95
CHD3-213ENST00000571249 MUC5BQ9HC84 5762 aaPredicted RBP2.86□□□□□ -1.95
CHD3-213ENST00000571249 M0QZ58 72 aa2.83□□□□□ -1.96
CHD3-213ENST00000571249 MT1XP80297 61 aa2.83□□□□□ -1.96
CHD3-213ENST00000571249 KRTAP13-4Q3LI77 160 aa2.83□□□□□ -1.96
CHD3-213ENST00000571249 ROMO1P60602 79 aa2.81□□□□□ -1.96
CHD3-213ENST00000571249 KRTAP10-12P60413 245 aa2.78□□□□□ -1.96
CHD3-213ENST00000571249 CRIPTQ9P021 101 aa2.76□□□□□ -1.97
CHD3-213ENST00000571249 KRTAP12-1P59990 96 aa2.75□□□□□ -1.97
CHD3-213ENST00000571249 KRTAP5-4Q6L8H1 288 aa2.74□□□□□ -1.97
CHD3-213ENST00000571249 A0A0D9SG42 100 aa2.73□□□□□ -1.97
CHD3-213ENST00000571249 LCE3CQ5T5A8 94 aa2.72□□□□□ -1.97
CHD3-213ENST00000571249 KRTAP10-7P60409 375 aaPredicted RBP2.71□□□□□ -1.98
CHD3-213ENST00000571249 PLAC4Q8WY50 150 aa2.68□□□□□ -1.98
CHD3-213ENST00000571249 KRTAP20-2Q3LI61 65 aa2.65□□□□□ -1.99
CHD3-213ENST00000571249 KRTAP19-3Q7Z4W3 81 aa2.64□□□□□ -1.99
CHD3-213ENST00000571249 KRTAP5-8O75690 187 aa2.62□□□□□ -1.99
CHD3-213ENST00000571249 C10orf95Q9H7T3 257 aa2.6□□□□□ -1.99
CHD3-213ENST00000571249 MT1EP04732 61 aa2.55□□□□□ -2
CHD3-213ENST00000571249 KRTAP19-7Q3SYF9 63 aa2.55□□□□□ -2
CHD3-213ENST00000571249 SYNE1Q8NF91 8797 aaKnown RBP2.55□□□□□ -2
CHD3-213ENST00000571249 KRTAP4-3Q9BYR4 195 aa2.53□□□□□ -2
CHD3-213ENST00000571249 MT1GP13640 62 aa2.51□□□□□ -2.01
CHD3-213ENST00000571249 PP632Q6XCG6 107 aa2.5□□□□□ -2.01
CHD3-213ENST00000571249 TNP1P09430 55 aa2.49□□□□□ -2.01
CHD3-213ENST00000571249 LCE3EQ5T5B0 92 aa2.48□□□□□ -2.01
CHD3-213ENST00000571249 MT1MQ8N339 61 aa2.47□□□□□ -2.01
CHD3-213ENST00000571249 OBSCNQ5VST9 7968 aa2.44□□□□□ -2.02
CHD3-213ENST00000571249 INE1O15225 51 aa2.44□□□□□ -2.02
CHD3-213ENST00000571249 KRTAP5-2Q701N4 177 aa2.43□□□□□ -2.02
CHD3-213ENST00000571249 KRTAP12-4P60329 112 aa2.4□□□□□ -2.03
CHD3-213ENST00000571249 LCE3AQ5TA76 89 aa2.36□□□□□ -2.03
CHD3-213ENST00000571249 KRTAP19-5Q3LI72 72 aa2.35□□□□□ -2.03
CHD3-213ENST00000571249 MT1LQ93083 61 aa2.34□□□□□ -2.03
CHD3-213ENST00000571249 KRTAP5-5Q701N2 237 aaPredicted RBP2.32□□□□□ -2.04
CHD3-213ENST00000571249 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
CHD3-213ENST00000571249 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
CHD3-213ENST00000571249 KRTAP12-3P60328 96 aa2.28□□□□□ -2.04
CHD3-213ENST00000571249 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
CHD3-213ENST00000571249 LCE3DQ9BYE3 92 aa2.21□□□□□ -2.06
CHD3-213ENST00000571249 KRTAP5-1Q6L8H4 278 aa2.2□□□□□ -2.06
CHD3-213ENST00000571249 KRTAP9-6A8MVA2 160 aa2.16□□□□□ -2.06
CHD3-213ENST00000571249 KRTAP6-2Q3LI66 62 aa2.06□□□□□ -2.08
CHD3-213ENST00000571249 KRTAP6-1Q3LI64 71 aa2.02□□□□□ -2.09
CHD3-213ENST00000571249 MT1AP04731 61 aa1.98□□□□□ -2.09
CHD3-213ENST00000571249 PHGR1C9JFL3 82 aa1.95□□□□□ -2.1
CHD3-213ENST00000571249 KRTAP4-4Q9BYR3 166 aa1.93□□□□□ -2.1
CHD3-213ENST00000571249 LCE1BQ5T7P3 118 aa1.82□□□□□ -2.12
CHD3-213ENST00000571249 LCE1CQ5T751 118 aa1.68□□□□□ -2.14
CHD3-213ENST00000571249 MUC19Q7Z5P9 8384 aa1.57□□□□□ -2.16
CHD3-213ENST00000571249 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
CHD3-213ENST00000571249 PRM1P04553 51 aa1.39□□□□□ -2.19
CHD3-213ENST00000571249 KRTAP21-2Q3LI59 83 aa1.33□□□□□ -2.2
CHD3-213ENST00000571249 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 64.6 ms