RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	PRR15L	Q9BU68	103 aa		4.81	□□□□□ -1.64
CLK3-222	ENST00000568232	CDC42SE1	Q9NRR8	79 aa		4.75	□□□□□ -1.65
CLK3-222	ENST00000568232	PLAC4	Q8WY50	150 aa		4.73	□□□□□ -1.65
CLK3-222	ENST00000568232		A8MU10	97 aa		4.72	□□□□□ -1.65
CLK3-222	ENST00000568232		A0A1B0GU69	56 aa		4.71	□□□□□ -1.66
CLK3-222	ENST00000568232	HMCN1	Q96RW7	5635 aa		4.71	□□□□□ -1.66
CLK3-222	ENST00000568232		A6NED7	52 aa		4.7	□□□□□ -1.66
CLK3-222	ENST00000568232	AHNAK2	Q8IVF2	5795 aa		4.67	□□□□□ -1.66
CLK3-222	ENST00000568232	KRTAP10-12	P60413	245 aa		4.65	□□□□□ -1.67
CLK3-222	ENST00000568232	KRTAP5-10	Q6L8G5	202 aa		4.65	□□□□□ -1.67
CLK3-222	ENST00000568232	UQCR11	O14957	56 aa		4.64	□□□□□ -1.67
CLK3-222	ENST00000568232	MT4	P47944	62 aa		4.61	□□□□□ -1.67
CLK3-222	ENST00000568232	LCE1E	Q5T753	118 aa		4.6	□□□□□ -1.67
CLK3-222	ENST00000568232		H0YAA0	97 aa		4.59	□□□□□ -1.67
CLK3-222	ENST00000568232	ADM2	Q7Z4H4	148 aa		4.59	□□□□□ -1.67
CLK3-222	ENST00000568232	PRAC1	Q96KF2	57 aa		4.58	□□□□□ -1.68
CLK3-222	ENST00000568232	SPATA8	Q6RVD6	105 aa		4.57	□□□□□ -1.68
CLK3-222	ENST00000568232	MIR22HG	Q0VDD5	57 aa		4.55	□□□□□ -1.68
CLK3-222	ENST00000568232	ROMO1	P60602	79 aa		4.54	□□□□□ -1.68
CLK3-222	ENST00000568232	KRTAP5-7	Q6L8G8	165 aa		4.53	□□□□□ -1.68
CLK3-222	ENST00000568232		A0A1B0GU33	70 aa		4.52	□□□□□ -1.69
CLK3-222	ENST00000568232		R4GN34	69 aa		4.49	□□□□□ -1.69
CLK3-222	ENST00000568232	KRTAP19-3	Q7Z4W3	81 aa		4.46	□□□□□ -1.7
CLK3-222	ENST00000568232		K7ERS5	55 aa		4.45	□□□□□ -1.7
CLK3-222	ENST00000568232		M0QZ58	72 aa		4.45	□□□□□ -1.7
CLK3-222	ENST00000568232	SPRR5	A0A1B0GTR4	108 aa		4.44	□□□□□ -1.7
CLK3-222	ENST00000568232		P0C880	135 aa		4.43	□□□□□ -1.7
CLK3-222	ENST00000568232	KRTAP19-7	Q3SYF9	63 aa		4.41	□□□□□ -1.7
CLK3-222	ENST00000568232	MT1E	P04732	61 aa		4.4	□□□□□ -1.71
CLK3-222	ENST00000568232	KRTAP5-4	Q6L8H1	288 aa		4.34	□□□□□ -1.71
CLK3-222	ENST00000568232	MT3	P25713	68 aa		4.32	□□□□□ -1.72
CLK3-222	ENST00000568232	KRTAP25-1	Q3LHN0	102 aa		4.31	□□□□□ -1.72
CLK3-222	ENST00000568232	LUZP6	Q538Z0	58 aa		4.31	□□□□□ -1.72
CLK3-222	ENST00000568232	MT1G	P13640	62 aa		4.28	□□□□□ -1.72
CLK3-222	ENST00000568232	MT1M	Q8N339	61 aa		4.23	□□□□□ -1.73
CLK3-222	ENST00000568232	KRTAP5-1	Q6L8H4	278 aa		4.22	□□□□□ -1.73
CLK3-222	ENST00000568232	PP632	Q6XCG6	107 aa		4.22	□□□□□ -1.73
CLK3-222	ENST00000568232	KRTAP13-4	Q3LI77	160 aa		4.21	□□□□□ -1.74
CLK3-222	ENST00000568232	KRTAP4-3	Q9BYR4	195 aa		4.21	□□□□□ -1.74
CLK3-222	ENST00000568232		A0A0D9SG42	100 aa		4.2	□□□□□ -1.74
CLK3-222	ENST00000568232	NDUFAF8	A1L188	74 aa		4.17	□□□□□ -1.74
CLK3-222	ENST00000568232	KRTAP19-5	Q3LI72	72 aa		4.16	□□□□□ -1.74
CLK3-222	ENST00000568232	KRTAP20-2	Q3LI61	65 aa		4.15	□□□□□ -1.75
CLK3-222	ENST00000568232	CAMK2N1	Q7Z7J9	78 aa		4.15	□□□□□ -1.75
CLK3-222	ENST00000568232	SPINT4	Q6UDR6	99 aa		4.14	□□□□□ -1.75
CLK3-222	ENST00000568232	KRTAP12-1	P59990	96 aa		4.13	□□□□□ -1.75
CLK3-222	ENST00000568232	LCE1F	Q5T754	118 aa		4.12	□□□□□ -1.75
CLK3-222	ENST00000568232	MT1L	Q93083	61 aa		4.11	□□□□□ -1.75
CLK3-222	ENST00000568232	KRTAP9-6	A8MVA2	160 aa		4.1	□□□□□ -1.75
CLK3-222	ENST00000568232	KRTAP4-4	Q9BYR3	166 aa		4.07	□□□□□ -1.76
CLK3-222	ENST00000568232	AHNAK	Q09666	5890 aa	Known RBP	4.01	□□□□□ -1.77
CLK3-222	ENST00000568232	MUC5AC	P98088	5654 aa		3.97	□□□□□ -1.77
CLK3-222	ENST00000568232	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.94	□□□□□ -1.78
CLK3-222	ENST00000568232	KRTAP12-4	P60329	112 aa		3.93	□□□□□ -1.78
CLK3-222	ENST00000568232	SYNE1	Q8NF91	8797 aa	Known RBP	3.92	□□□□□ -1.78
CLK3-222	ENST00000568232	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.92	□□□□□ -1.78
CLK3-222	ENST00000568232	C10orf95	Q9H7T3	257 aa		3.88	□□□□□ -1.79
CLK3-222	ENST00000568232	LCE3C	Q5T5A8	94 aa		3.86	□□□□□ -1.79
CLK3-222	ENST00000568232	KRTAP5-8	O75690	187 aa		3.85	□□□□□ -1.79
CLK3-222	ENST00000568232	TNP1	P09430	55 aa		3.85	□□□□□ -1.79
CLK3-222	ENST00000568232	LCE3A	Q5TA76	89 aa		3.79	□□□□□ -1.8
CLK3-222	ENST00000568232	OBSCN	Q5VST9	7968 aa		3.7	□□□□□ -1.82
CLK3-222	ENST00000568232	KRTAP5-2	Q701N4	177 aa		3.7	□□□□□ -1.82
CLK3-222	ENST00000568232	KRTAP12-3	P60328	96 aa		3.61	□□□□□ -1.83
CLK3-222	ENST00000568232	INE1	O15225	51 aa		3.57	□□□□□ -1.84
CLK3-222	ENST00000568232	LCE3E	Q5T5B0	92 aa		3.53	□□□□□ -1.84
CLK3-222	ENST00000568232	KRTAP6-1	Q3LI64	71 aa		3.52	□□□□□ -1.85
CLK3-222	ENST00000568232	KRTAP6-2	Q3LI66	62 aa		3.47	□□□□□ -1.85
CLK3-222	ENST00000568232	MT1A	P04731	61 aa		3.46	□□□□□ -1.86
CLK3-222	ENST00000568232	LCE1C	Q5T751	118 aa		3.01	□□□□□ -1.93
CLK3-222	ENST00000568232	LCE1B	Q5T7P3	118 aa		3.01	□□□□□ -1.93
CLK3-222	ENST00000568232	LCE3D	Q9BYE3	92 aa		2.75	□□□□□ -1.97
CLK3-222	ENST00000568232	PHGR1	C9JFL3	82 aa		2.74	□□□□□ -1.97
CLK3-222	ENST00000568232	MUC19	Q7Z5P9	8384 aa		2.55	□□□□□ -2
CLK3-222	ENST00000568232	KRTAP21-2	Q3LI59	83 aa		2.32	□□□□□ -2.04
CLK3-222	ENST00000568232	PRM1	P04553	51 aa		2.13	□□□□□ -2.07
CLK3-222	ENST00000568232	KRTAP21-1	Q3LI58	79 aa		2.06	□□□□□ -2.08
CLK3-222	ENST00000568232	MUC16	Q8WXI7	14507 aa		1.6	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 245.6 ms