RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 KRTAP10-12P60413 245 aa4.41□□□□□ -1.7
CLN3-226ENST00000567160 HMCN1Q96RW7 5635 aa4.4□□□□□ -1.7
CLN3-226ENST00000567160 KRTAP5-10Q6L8G5 202 aa4.37□□□□□ -1.71
CLN3-226ENST00000567160 AHNAK2Q8IVF2 5795 aa4.36□□□□□ -1.71
CLN3-226ENST00000567160 TNP1P09430 55 aa4.36□□□□□ -1.71
CLN3-226ENST00000567160 MT4P47944 62 aa4.31□□□□□ -1.72
CLN3-226ENST00000567160 ROMO1P60602 79 aa4.3□□□□□ -1.72
CLN3-226ENST00000567160 LCE4AQ5TA78 99 aa4.3□□□□□ -1.72
CLN3-226ENST00000567160 LCE5AQ5TCM9 118 aa4.29□□□□□ -1.72
CLN3-226ENST00000567160 KRTAP5-7Q6L8G8 165 aa4.29□□□□□ -1.72
CLN3-226ENST00000567160 KRTAP25-1Q3LHN0 102 aa4.28□□□□□ -1.72
CLN3-226ENST00000567160 PRO0628Q9UI54 55 aa4.28□□□□□ -1.72
CLN3-226ENST00000567160 LCE3AQ5TA76 89 aa4.24□□□□□ -1.73
CLN3-226ENST00000567160 KRTAP19-3Q7Z4W3 81 aa4.22□□□□□ -1.73
CLN3-226ENST00000567160 SPRR5A0A1B0GTR4 108 aa4.19□□□□□ -1.74
CLN3-226ENST00000567160 PMAIP1Q13794 54 aa4.16□□□□□ -1.74
CLN3-226ENST00000567160 KRTAP19-5Q3LI72 72 aa4.16□□□□□ -1.74
CLN3-226ENST00000567160 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.75
CLN3-226ENST00000567160 KRTAP5-3Q6L8H2 238 aa4.15□□□□□ -1.75
CLN3-226ENST00000567160 MT1EP04732 61 aa4.12□□□□□ -1.75
CLN3-226ENST00000567160 KRTAP23-1A1A580 65 aa4.1□□□□□ -1.75
CLN3-226ENST00000567160 KRTAP4-6Q9BYQ5 205 aa4.1□□□□□ -1.75
CLN3-226ENST00000567160 KRTAP5-4Q6L8H1 288 aa4.09□□□□□ -1.75
CLN3-226ENST00000567160 SVIPQ8NHG7 77 aa4.09□□□□□ -1.75
CLN3-226ENST00000567160 PP632Q6XCG6 107 aa4.08□□□□□ -1.76
CLN3-226ENST00000567160 KRTAP12-3P60328 96 aa4.07□□□□□ -1.76
CLN3-226ENST00000567160 MT1GP13640 62 aa4.06□□□□□ -1.76
CLN3-226ENST00000567160 MT1LQ93083 61 aa3.98□□□□□ -1.77
CLN3-226ENST00000567160 MT1MQ8N339 61 aa3.96□□□□□ -1.78
CLN3-226ENST00000567160 PRAC1Q96KF2 57 aa3.96□□□□□ -1.78
CLN3-226ENST00000567160 KTN1-AS1Q86SY8 53 aa3.95□□□□□ -1.78
CLN3-226ENST00000567160 H3BS24 57 aa3.92□□□□□ -1.78
CLN3-226ENST00000567160 KRTAP15-1Q3LI76 137 aa3.91□□□□□ -1.78
CLN3-226ENST00000567160 KRTAP20-2Q3LI61 65 aa3.9□□□□□ -1.79
CLN3-226ENST00000567160 KRTAP4-3Q9BYR4 195 aa3.85□□□□□ -1.79
CLN3-226ENST00000567160 KRTAP4-7Q9BYR0 210 aa3.84□□□□□ -1.79
CLN3-226ENST00000567160 LOC100996750A0A140TA64 210 aa3.83□□□□□ -1.8
CLN3-226ENST00000567160 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
CLN3-226ENST00000567160 KRTAP19-4Q3LI73 84 aa3.78□□□□□ -1.8
CLN3-226ENST00000567160 LCE3CQ5T5A8 94 aa3.78□□□□□ -1.8
CLN3-226ENST00000567160 AHNAKQ09666 5890 aaKnown RBP3.77□□□□□ -1.81
CLN3-226ENST00000567160 MUC5ACP98088 5654 aa3.73□□□□□ -1.81
CLN3-226ENST00000567160 KRTAP4-11Q9BYQ6 195 aa3.7□□□□□ -1.82
CLN3-226ENST00000567160 MUC5BQ9HC84 5762 aaPredicted RBP3.68□□□□□ -1.82
CLN3-226ENST00000567160 KRTAP5-5Q701N2 237 aaPredicted RBP3.67□□□□□ -1.82
CLN3-226ENST00000567160 KRTAP5-8O75690 187 aa3.6□□□□□ -1.83
CLN3-226ENST00000567160 KRTAP9-6A8MVA2 160 aa3.57□□□□□ -1.84
CLN3-226ENST00000567160 KRTAP9-9Q9BYP9 154 aa3.53□□□□□ -1.84
CLN3-226ENST00000567160 SYNE1Q8NF91 8797 aaKnown RBP3.51□□□□□ -1.85
CLN3-226ENST00000567160 KRTAP5-2Q701N4 177 aa3.48□□□□□ -1.85
CLN3-226ENST00000567160 OBSCNQ5VST9 7968 aa3.39□□□□□ -1.87
CLN3-226ENST00000567160 MT1AP04731 61 aa3.38□□□□□ -1.87
CLN3-226ENST00000567160 KRTAP6-1Q3LI64 71 aa3.36□□□□□ -1.87
CLN3-226ENST00000567160 KRTAP9-4Q9BYQ2 154 aa3.26□□□□□ -1.89
CLN3-226ENST00000567160 LUZP6Q538Z0 58 aa3.25□□□□□ -1.89
CLN3-226ENST00000567160 KRTAP6-2Q3LI66 62 aa3.24□□□□□ -1.89
CLN3-226ENST00000567160 KRTAP5-1Q6L8H4 278 aa3.22□□□□□ -1.89
CLN3-226ENST00000567160 A0A0A0MQY5 61 aa3.19□□□□□ -1.9
CLN3-226ENST00000567160 MT3P25713 68 aa3.08□□□□□ -1.92
CLN3-226ENST00000567160 NDUFAF8A1L188 74 aa3.07□□□□□ -1.92
CLN3-226ENST00000567160 KRTAP4-12Q9BQ66 201 aa3.07□□□□□ -1.92
CLN3-226ENST00000567160 KRTAP4-2Q9BYR5 136 aa2.97□□□□□ -1.93
CLN3-226ENST00000567160 LCE1EQ5T753 118 aa2.92□□□□□ -1.94
CLN3-226ENST00000567160 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
CLN3-226ENST00000567160 LCE1BQ5T7P3 118 aa2.79□□□□□ -1.96
CLN3-226ENST00000567160 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
CLN3-226ENST00000567160 LCE3EQ5T5B0 92 aa2.69□□□□□ -1.98
CLN3-226ENST00000567160 INE1O15225 51 aa2.6□□□□□ -1.99
CLN3-226ENST00000567160 KRTAP5-11Q6L8G4 156 aa2.6□□□□□ -1.99
CLN3-226ENST00000567160 PHGR1C9JFL3 82 aa2.59□□□□□ -1.99
CLN3-226ENST00000567160 LCE1FQ5T754 118 aa2.58□□□□□ -2
CLN3-226ENST00000567160 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
CLN3-226ENST00000567160 PRM1P04553 51 aa2.23□□□□□ -2.05
CLN3-226ENST00000567160 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
CLN3-226ENST00000567160 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
CLN3-226ENST00000567160 KRTAP4-4Q9BYR3 166 aa2.05□□□□□ -2.08
CLN3-226ENST00000567160 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
CLN3-226ENST00000567160 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 70.7 ms