RNA–Protein interactions for RNA: ENST00000564047.1

SPG7-209, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 2

Gene SPG7, Length 422 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-209ENST00000564047 KRTAP10-12P60413 245 aa5.12□□□□□ -1.59
SPG7-209ENST00000564047 SPRR2EP22531 72 aa5.1□□□□□ -1.59
SPG7-209ENST00000564047 SPRR2BP35325 72 aa5.1□□□□□ -1.59
SPG7-209ENST00000564047 SPRR2AP35326 72 aa5.1□□□□□ -1.59
SPG7-209ENST00000564047 KRTAP15-1Q3LI76 137 aa5.06□□□□□ -1.6
SPG7-209ENST00000564047 SPRR2FQ96RM1 72 aa5.05□□□□□ -1.6
SPG7-209ENST00000564047 GPR98Q8WXG9 6306 aa5.05□□□□□ -1.6
SPG7-209ENST00000564047 KRTAP4-12Q9BQ66 201 aa5.04□□□□□ -1.6
SPG7-209ENST00000564047 KRTAP4-8A0A0G2JLE6 195 aa4.99□□□□□ -1.61
SPG7-209ENST00000564047 KRTAP19-4Q3LI73 84 aa4.99□□□□□ -1.61
SPG7-209ENST00000564047 LCE3BQ5TA77 95 aa4.96□□□□□ -1.62
SPG7-209ENST00000564047 SPRR2DP22532 72 aa4.94□□□□□ -1.62
SPG7-209ENST00000564047 KRTAP8-1Q8IUC2 63 aa4.94□□□□□ -1.62
SPG7-209ENST00000564047 LCE1AQ5T7P2 110 aa4.93□□□□□ -1.62
SPG7-209ENST00000564047 LCE3AQ5TA76 89 aa4.93□□□□□ -1.62
SPG7-209ENST00000564047 KRTAP19-7Q3SYF9 63 aa4.81□□□□□ -1.64
SPG7-209ENST00000564047 KRTAP9-9Q9BYP9 154 aa4.81□□□□□ -1.64
SPG7-209ENST00000564047 KRTAP9-4Q9BYQ2 154 aa4.81□□□□□ -1.64
SPG7-209ENST00000564047 DSTQ03001 7570 aaKnown RBP4.81□□□□□ -1.64
SPG7-209ENST00000564047 KRTAP19-5Q3LI72 72 aa4.8□□□□□ -1.64
SPG7-209ENST00000564047 NDUFAF8A1L188 74 aa4.75□□□□□ -1.65
SPG7-209ENST00000564047 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
SPG7-209ENST00000564047 SPRR5A0A1B0GTR4 108 aa4.74□□□□□ -1.65
SPG7-209ENST00000564047 MT1EP04732 61 aa4.74□□□□□ -1.65
SPG7-209ENST00000564047 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
SPG7-209ENST00000564047 LUZP6Q538Z0 58 aa4.69□□□□□ -1.66
SPG7-209ENST00000564047 LCE1DQ5T752 114 aa4.64□□□□□ -1.67
SPG7-209ENST00000564047 KRTAP4-9Q9BYQ8 210 aa4.63□□□□□ -1.67
SPG7-209ENST00000564047 KRTAP19-3Q7Z4W3 81 aa4.61□□□□□ -1.67
SPG7-209ENST00000564047 MT1LQ93083 61 aa4.61□□□□□ -1.67
SPG7-209ENST00000564047 LCE5AQ5TCM9 118 aa4.56□□□□□ -1.68
SPG7-209ENST00000564047 MT1GP13640 62 aa4.55□□□□□ -1.68
SPG7-209ENST00000564047 KRTAP4-7Q9BYR0 210 aa4.52□□□□□ -1.69
SPG7-209ENST00000564047 HMCN1Q96RW7 5635 aa4.49□□□□□ -1.69
SPG7-209ENST00000564047 MT1MQ8N339 61 aa4.48□□□□□ -1.69
SPG7-209ENST00000564047 AHNAK2Q8IVF2 5795 aa4.46□□□□□ -1.7
SPG7-209ENST00000564047 LCE3CQ5T5A8 94 aa4.42□□□□□ -1.7
SPG7-209ENST00000564047 KRTAP5-10Q6L8G5 202 aa4.4□□□□□ -1.71
SPG7-209ENST00000564047 MT4P47944 62 aa4.36□□□□□ -1.71
SPG7-209ENST00000564047 KRTAP4-11Q9BYQ6 195 aa4.34□□□□□ -1.71
SPG7-209ENST00000564047 KRTAP4-3Q9BYR4 195 aa4.34□□□□□ -1.71
SPG7-209ENST00000564047 A0A0A0MQY5 61 aa4.31□□□□□ -1.72
SPG7-209ENST00000564047 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
SPG7-209ENST00000564047 KRTAP5-7Q6L8G8 165 aa4.3□□□□□ -1.72
SPG7-209ENST00000564047 KRTAP5-3Q6L8H2 238 aa4.19□□□□□ -1.74
SPG7-209ENST00000564047 KRTAP9-6A8MVA2 160 aa4.15□□□□□ -1.75
SPG7-209ENST00000564047 KRTAP5-4Q6L8H1 288 aa4.12□□□□□ -1.75
SPG7-209ENST00000564047 KRTAP5-5Q701N2 237 aaPredicted RBP4.07□□□□□ -1.76
SPG7-209ENST00000564047 INE1O15225 51 aa4.01□□□□□ -1.77
SPG7-209ENST00000564047 KRTAP20-2Q3LI61 65 aa3.94□□□□□ -1.78
SPG7-209ENST00000564047 MT1AP04731 61 aa3.93□□□□□ -1.78
SPG7-209ENST00000564047 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
SPG7-209ENST00000564047 KRTAP12-4P60329 112 aa3.84□□□□□ -1.79
SPG7-209ENST00000564047 SYNE1Q8NF91 8797 aaKnown RBP3.81□□□□□ -1.8
SPG7-209ENST00000564047 AHNAKQ09666 5890 aaKnown RBP3.8□□□□□ -1.8
SPG7-209ENST00000564047 MUC5BQ9HC84 5762 aaPredicted RBP3.78□□□□□ -1.8
SPG7-209ENST00000564047 MUC5ACP98088 5654 aa3.76□□□□□ -1.81
SPG7-209ENST00000564047 KRTAP5-8O75690 187 aa3.64□□□□□ -1.83
SPG7-209ENST00000564047 KRTAP6-2Q3LI66 62 aa3.61□□□□□ -1.83
SPG7-209ENST00000564047 KRTAP5-2Q701N4 177 aa3.59□□□□□ -1.83
SPG7-209ENST00000564047 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
SPG7-209ENST00000564047 MT3P25713 68 aa3.58□□□□□ -1.84
SPG7-209ENST00000564047 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
SPG7-209ENST00000564047 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
SPG7-209ENST00000564047 KRTAP5-1Q6L8H4 278 aa3.25□□□□□ -1.89
SPG7-209ENST00000564047 LCE1EQ5T753 118 aa3.18□□□□□ -1.9
SPG7-209ENST00000564047 PRM1P04553 51 aa2.96□□□□□ -1.94
SPG7-209ENST00000564047 LCE1CQ5T751 118 aa2.95□□□□□ -1.94
SPG7-209ENST00000564047 LCE1BQ5T7P3 118 aa2.95□□□□□ -1.94
SPG7-209ENST00000564047 KRTAP5-11Q6L8G4 156 aa2.9□□□□□ -1.95
SPG7-209ENST00000564047 LCE1FQ5T754 118 aa2.88□□□□□ -1.95
SPG7-209ENST00000564047 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.8□□□□□ -1.96
SPG7-209ENST00000564047 PHGR1C9JFL3 82 aa2.61□□□□□ -1.99
SPG7-209ENST00000564047 KRTAP21-2Q3LI59 83 aa2.55□□□□□ -2
SPG7-209ENST00000564047 KRTAP4-4Q9BYR3 166 aa2.32□□□□□ -2.04
SPG7-209ENST00000564047 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
SPG7-209ENST00000564047 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
SPG7-209ENST00000564047 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 139.7 ms