RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 LINC00472Q9H8W2 130 aa0.83□□□□□ -2.28
SMG1-204ENST00000561940 H3BUT2 72 aa0.81□□□□□ -2.28
SMG1-204ENST00000561940 KRTAP21-1Q3LI58 79 aa0.81□□□□□ -2.28
SMG1-204ENST00000561940 KRTAP19-5Q3LI72 72 aa0.81□□□□□ -2.28
SMG1-204ENST00000561940 hADV29S1A0JD25 119 aa0.8□□□□□ -2.28
SMG1-204ENST00000561940 PHGR1C9JFL3 82 aa0.8□□□□□ -2.28
SMG1-204ENST00000561940 LINC00308Q8TCZ7 52 aa0.8□□□□□ -2.28
SMG1-204ENST00000561940 TRBV7-4A0A0J9YYF1 115 aa0.79□□□□□ -2.28
SMG1-204ENST00000561940 NDUFB1O75438 58 aa0.79□□□□□ -2.28
SMG1-204ENST00000561940 C12orf57Q99622 126 aa0.78□□□□□ -2.28
SMG1-204ENST00000561940 KANTRA0A1W2PQU2 76 aa0.77□□□□□ -2.29
SMG1-204ENST00000561940 HCG22E2RYF7 251 aa0.77□□□□□ -2.29
SMG1-204ENST00000561940 SMCO4Q9NRQ5 59 aa0.77□□□□□ -2.29
SMG1-204ENST00000561940 M0QZ58 72 aa0.76□□□□□ -2.29
SMG1-204ENST00000561940 NDUFC1O43677 76 aa0.76□□□□□ -2.29
SMG1-204ENST00000561940 KRTAP6-2Q3LI66 62 aa0.76□□□□□ -2.29
SMG1-204ENST00000561940 ADIRFQ15847 76 aa0.75□□□□□ -2.29
SMG1-204ENST00000561940 MUSTN1Q8IVN3 82 aa0.75□□□□□ -2.29
SMG1-204ENST00000561940 S100ZQ8WXG8 99 aa0.74□□□□□ -2.29
SMG1-204ENST00000561940 MRPL34Q9BQ48 92 aaKnown RBP0.74□□□□□ -2.29
SMG1-204ENST00000561940 MT1AP04731 61 aa0.73□□□□□ -2.29
SMG1-204ENST00000561940 IFITM1P13164 125 aa0.73□□□□□ -2.29
SMG1-204ENST00000561940 A0A087WVE0 104 aa0.72□□□□□ -2.29
SMG1-204ENST00000561940 PLNP26678 52 aa0.72□□□□□ -2.29
SMG1-204ENST00000561940 BVES-AS1Q5T3Y7 98 aa0.72□□□□□ -2.29
SMG1-204ENST00000561940 KRTAP6-1Q3LI64 71 aa0.71□□□□□ -2.3
SMG1-204ENST00000561940 MT-ATP8P03928 68 aa0.69□□□□□ -2.3
SMG1-204ENST00000561940 PMCHL1Q16048 86 aa0.69□□□□□ -2.3
SMG1-204ENST00000561940 H0YGX0 51 aa0.68□□□□□ -2.3
SMG1-204ENST00000561940 PEA15Q15121 130 aa0.68□□□□□ -2.3
SMG1-204ENST00000561940 CYP4F30PQ9H0H9 118 aa0.68□□□□□ -2.3
SMG1-204ENST00000561940 MMP24-AS1A0A0U1RRL7 71 aa0.67□□□□□ -2.3
SMG1-204ENST00000561940 C18orf32Q8TCD1 76 aa0.67□□□□□ -2.3
SMG1-204ENST00000561940 DLEU1O43261 78 aa0.66□□□□□ -2.3
SMG1-204ENST00000561940 LEPROTL1O95214 131 aa0.65□□□□□ -2.31
SMG1-204ENST00000561940 A0A1B0GV90 55 aa0.63□□□□□ -2.31
SMG1-204ENST00000561940 ACYP1P07311 99 aa0.63□□□□□ -2.31
SMG1-204ENST00000561940 S100PP25815 95 aa0.63□□□□□ -2.31
SMG1-204ENST00000561940 PMCHL2Q9BQD1 86 aa0.61□□□□□ -2.31
SMG1-204ENST00000561940 NREPQ16612 68 aa0.6□□□□□ -2.31
SMG1-204ENST00000561940 TP53AIP1Q9HCN2 124 aa0.6□□□□□ -2.31
SMG1-204ENST00000561940 HIGD1BQ9P298 99 aa0.6□□□□□ -2.31
SMG1-204ENST00000561940 TRAV22A0A0B4J277 110 aa0.58□□□□□ -2.32
SMG1-204ENST00000561940 K7EP34 96 aa0.57□□□□□ -2.32
SMG1-204ENST00000561940 SYS1-DBNDD2H3BUS1 97 aa0.56□□□□□ -2.32
SMG1-204ENST00000561940 APOC3P02656 99 aa0.56□□□□□ -2.32
SMG1-204ENST00000561940 TNP1P09430 55 aa0.56□□□□□ -2.32
SMG1-204ENST00000561940 ATP5EP56381 51 aaPredicted RBP0.56□□□□□ -2.32
SMG1-204ENST00000561940 UQCR11O14957 56 aa0.55□□□□□ -2.32
SMG1-204ENST00000561940 KRTDAPP60985 99 aa0.54□□□□□ -2.32
SMG1-204ENST00000561940 SVBPQ8N300 66 aa0.54□□□□□ -2.32
SMG1-204ENST00000561940 SPCS1Q9Y6A9 102 aa0.52□□□□□ -2.33
SMG1-204ENST00000561940 COX6CP09669 75 aa0.51□□□□□ -2.33
SMG1-204ENST00000561940 S100A1P23297 94 aa0.51□□□□□ -2.33
SMG1-204ENST00000561940 UQCR10Q9UDW1 63 aa0.51□□□□□ -2.33
SMG1-204ENST00000561940 PRO1854Q9UHT4 67 aa0.51□□□□□ -2.33
SMG1-204ENST00000561940 TMEM218A2RU14 115 aa0.5□□□□□ -2.33
SMG1-204ENST00000561940 ATOX1O00244 68 aa0.48□□□□□ -2.33
SMG1-204ENST00000561940 LINC01558Q9Y6Z2 57 aa0.48□□□□□ -2.33
SMG1-204ENST00000561940 CHKB-CPT1BH3BT56 60 aa0.47□□□□□ -2.33
SMG1-204ENST00000561940 GTF2H5Q6ZYL4 71 aa0.45□□□□□ -2.34
SMG1-204ENST00000561940 ATXN8Q156A1 80 aa0.42□□□□□ -2.34
SMG1-204ENST00000561940 H0Y9P7 68 aa0.41□□□□□ -2.34
SMG1-204ENST00000561940 VAMP8Q9BV40 100 aa0.41□□□□□ -2.34
SMG1-204ENST00000561940 COX8AP10176 69 aa0.4□□□□□ -2.35
SMG1-204ENST00000561940 UBL5Q9BZL1 73 aa0.39□□□□□ -2.35
SMG1-204ENST00000561940 HSD52Q0P140 79 aa0.35□□□□□ -2.35
SMG1-204ENST00000561940 H7BZZ5 65 aa0.34□□□□□ -2.36
SMG1-204ENST00000561940 C14orf144Q96I85 54 aa0.34□□□□□ -2.36
SMG1-204ENST00000561940 SERP2Q8N6R1 65 aa0.27□□□□□ -2.37
SMG1-204ENST00000561940 ATP5EP2Q5VTU8 51 aa0.22□□□□□ -2.37
SMG1-204ENST00000561940 A0A1B0GU69 56 aa0.17□□□□□ -2.38
SMG1-204ENST00000561940 M0R143 59 aa0.17□□□□□ -2.38
SMG1-204ENST00000561940 LINC00643Q86TS7 51 aa0.12□□□□□ -2.39
SMG1-204ENST00000561940 PYY3Q5JQD4 70 aa0.09□□□□□ -2.4
SMG1-204ENST00000561940 ETDBQ3ZM63 59 aa0.08□□□□□ -2.4
SMG1-204ENST00000561940 COL5A1-AS1Q5SY13 56 aa0.01□□□□□ -2.41
SMG1-204ENST00000561940 PRM1P04553 51 aa-0.06□□□□□ -2.42
Retrieved 78 of 20,778 RNA–protein pairs in 6.1 ms