RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 H3BUT2 72 aa0.99□□□□□ -2.25
VPS13C-210ENST00000561258 K7EQZ3 153 aa0.99□□□□□ -2.25
VPS13C-210ENST00000561258 SVBPQ8N300 66 aa0.99□□□□□ -2.25
VPS13C-210ENST00000561258 SNHG12Q9BXW3 62 aa0.99□□□□□ -2.25
VPS13C-210ENST00000561258 SMIM27A0A1W2PRY6 76 aa0.98□□□□□ -2.25
VPS13C-210ENST00000561258 IFITM1P13164 125 aa0.98□□□□□ -2.25
VPS13C-210ENST00000561258 SMIM6P0DI80 62 aa0.97□□□□□ -2.25
VPS13C-210ENST00000561258 C14orf144Q96I85 54 aa0.97□□□□□ -2.25
VPS13C-210ENST00000561258 C12orf57Q99622 126 aa0.96□□□□□ -2.26
VPS13C-210ENST00000561258 ATP5EP56381 51 aaPredicted RBP0.95□□□□□ -2.26
VPS13C-210ENST00000561258 HSD52Q0P140 79 aa0.95□□□□□ -2.26
VPS13C-210ENST00000561258 GTF2H5Q6ZYL4 71 aa0.95□□□□□ -2.26
VPS13C-210ENST00000561258 MT1LQ93083 61 aa0.95□□□□□ -2.26
VPS13C-210ENST00000561258 SMCO4Q9NRQ5 59 aa0.95□□□□□ -2.26
VPS13C-210ENST00000561258 ADIRFQ15847 76 aa0.94□□□□□ -2.26
VPS13C-210ENST00000561258 KRTAP19-5Q3LI72 72 aa0.94□□□□□ -2.26
VPS13C-210ENST00000561258 KANTRA0A1W2PQU2 76 aa0.93□□□□□ -2.26
VPS13C-210ENST00000561258 hADV29S1A0JD25 119 aa0.93□□□□□ -2.26
VPS13C-210ENST00000561258 LINC00308Q8TCZ7 52 aa0.93□□□□□ -2.26
VPS13C-210ENST00000561258 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
VPS13C-210ENST00000561258 M0QZ58 72 aa0.92□□□□□ -2.26
VPS13C-210ENST00000561258 NDUFB1O75438 58 aa0.92□□□□□ -2.26
VPS13C-210ENST00000561258 LINC01546A6NGU7 62 aa0.91□□□□□ -2.26
VPS13C-210ENST00000561258 LINC00472Q9H8W2 130 aa0.91□□□□□ -2.26
VPS13C-210ENST00000561258 MUSTN1Q8IVN3 82 aa0.9□□□□□ -2.27
VPS13C-210ENST00000561258 TRBV7-4A0A0J9YYF1 115 aa0.89□□□□□ -2.27
VPS13C-210ENST00000561258 PMCHL1Q16048 86 aa0.89□□□□□ -2.27
VPS13C-210ENST00000561258 TMEM218A2RU14 115 aa0.87□□□□□ -2.27
VPS13C-210ENST00000561258 NDUFC1O43677 76 aa0.87□□□□□ -2.27
VPS13C-210ENST00000561258 MT-ATP8P03928 68 aa0.87□□□□□ -2.27
VPS13C-210ENST00000561258 KRTAP6-2Q3LI66 62 aa0.87□□□□□ -2.27
VPS13C-210ENST00000561258 CHKB-CPT1BH3BT56 60 aa0.86□□□□□ -2.27
VPS13C-210ENST00000561258 PLNP26678 52 aa0.86□□□□□ -2.27
VPS13C-210ENST00000561258 MRPL34Q9BQ48 92 aaKnown RBP0.86□□□□□ -2.27
VPS13C-210ENST00000561258 LINC01558Q9Y6Z2 57 aa0.86□□□□□ -2.27
VPS13C-210ENST00000561258 S100ZQ8WXG8 99 aa0.85□□□□□ -2.27
VPS13C-210ENST00000561258 UQCR11O14957 56 aa0.84□□□□□ -2.27
VPS13C-210ENST00000561258 A0A087WVE0 104 aa0.83□□□□□ -2.28
VPS13C-210ENST00000561258 TRAV22A0A0B4J277 110 aa0.83□□□□□ -2.28
VPS13C-210ENST00000561258 BVES-AS1Q5T3Y7 98 aa0.83□□□□□ -2.28
VPS13C-210ENST00000561258 KRTAP6-1Q3LI64 71 aa0.82□□□□□ -2.28
VPS13C-210ENST00000561258 UQCR10Q9UDW1 63 aa0.82□□□□□ -2.28
VPS13C-210ENST00000561258 MMP24-AS1A0A0U1RRL7 71 aa0.8□□□□□ -2.28
VPS13C-210ENST00000561258 APOC3P02656 99 aa0.8□□□□□ -2.28
VPS13C-210ENST00000561258 MT1AP04731 61 aa0.8□□□□□ -2.28
VPS13C-210ENST00000561258 PEA15Q15121 130 aa0.8□□□□□ -2.28
VPS13C-210ENST00000561258 C18orf32Q8TCD1 76 aa0.8□□□□□ -2.28
VPS13C-210ENST00000561258 PMCHL2Q9BQD1 86 aa0.8□□□□□ -2.28
VPS13C-210ENST00000561258 PRO1854Q9UHT4 67 aa0.78□□□□□ -2.28
VPS13C-210ENST00000561258 KRTDAPP60985 99 aa0.77□□□□□ -2.29
VPS13C-210ENST00000561258 H0YGX0 51 aa0.76□□□□□ -2.29
VPS13C-210ENST00000561258 LEPROTL1O95214 131 aa0.76□□□□□ -2.29
VPS13C-210ENST00000561258 COX6CP09669 75 aa0.76□□□□□ -2.29
VPS13C-210ENST00000561258 K7EP34 96 aa0.74□□□□□ -2.29
VPS13C-210ENST00000561258 ACYP1P07311 99 aa0.74□□□□□ -2.29
VPS13C-210ENST00000561258 NREPQ16612 68 aa0.72□□□□□ -2.29
VPS13C-210ENST00000561258 M0R143 59 aa0.71□□□□□ -2.3
VPS13C-210ENST00000561258 KRTAP21-1Q3LI58 79 aa0.71□□□□□ -2.3
VPS13C-210ENST00000561258 HIGD1BQ9P298 99 aa0.67□□□□□ -2.3
VPS13C-210ENST00000561258 SYS1-DBNDD2H3BUS1 97 aa0.66□□□□□ -2.3
VPS13C-210ENST00000561258 TP53AIP1Q9HCN2 124 aa0.66□□□□□ -2.3
VPS13C-210ENST00000561258 TNP1P09430 55 aa0.65□□□□□ -2.31
VPS13C-210ENST00000561258 SPCS1Q9Y6A9 102 aa0.65□□□□□ -2.31
VPS13C-210ENST00000561258 COL5A1-AS1Q5SY13 56 aa0.62□□□□□ -2.31
VPS13C-210ENST00000561258 H7BZZ5 65 aa0.61□□□□□ -2.31
VPS13C-210ENST00000561258 ATOX1O00244 68 aa0.61□□□□□ -2.31
VPS13C-210ENST00000561258 SERP2Q8N6R1 65 aa0.6□□□□□ -2.31
VPS13C-210ENST00000561258 VAMP8Q9BV40 100 aa0.57□□□□□ -2.32
VPS13C-210ENST00000561258 H0Y9P7 68 aa0.55□□□□□ -2.32
VPS13C-210ENST00000561258 ATXN8Q156A1 80 aa0.53□□□□□ -2.32
VPS13C-210ENST00000561258 UBL5Q9BZL1 73 aa0.5□□□□□ -2.33
VPS13C-210ENST00000561258 COX8AP10176 69 aa0.49□□□□□ -2.33
VPS13C-210ENST00000561258 A0A1B0GU69 56 aa0.42□□□□□ -2.34
VPS13C-210ENST00000561258 ETDBQ3ZM63 59 aa0.42□□□□□ -2.34
VPS13C-210ENST00000561258 PYY3Q5JQD4 70 aa0.36□□□□□ -2.35
VPS13C-210ENST00000561258 ATP5EP2Q5VTU8 51 aa0.28□□□□□ -2.36
VPS13C-210ENST00000561258 PRM1P04553 51 aa0.18□□□□□ -2.38
VPS13C-210ENST00000561258 LINC00643Q86TS7 51 aa0.18□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 288.8 ms