RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TNP1P09430 55 aa5.62□□□□□ -1.51
LDLR-213ENST00000560502 LCE3BQ5TA77 95 aa5.58□□□□□ -1.52
LDLR-213ENST00000560502 PRAC1Q96KF2 57 aa5.57□□□□□ -1.52
LDLR-213ENST00000560502 KRTAP10-7P60409 375 aaPredicted RBP5.56□□□□□ -1.52
LDLR-213ENST00000560502 KRTAP10-12P60413 245 aa5.55□□□□□ -1.52
LDLR-213ENST00000560502 KRTAP23-1A1A580 65 aa5.53□□□□□ -1.52
LDLR-213ENST00000560502 PP632Q6XCG6 107 aa5.52□□□□□ -1.53
LDLR-213ENST00000560502 GPR98Q8WXG9 6306 aa5.51□□□□□ -1.53
LDLR-213ENST00000560502 DSTQ03001 7570 aaKnown RBP5.38□□□□□ -1.55
LDLR-213ENST00000560502 LCE3AQ5TA76 89 aa5.3□□□□□ -1.56
LDLR-213ENST00000560502 LCE5AQ5TCM9 118 aa5.27□□□□□ -1.57
LDLR-213ENST00000560502 KRTAP4-9Q9BYQ8 210 aa5.26□□□□□ -1.57
LDLR-213ENST00000560502 KRTAP19-7Q3SYF9 63 aa5.24□□□□□ -1.57
LDLR-213ENST00000560502 MT1EP04732 61 aa5.2□□□□□ -1.58
LDLR-213ENST00000560502 KRTAP19-3Q7Z4W3 81 aa5.2□□□□□ -1.58
LDLR-213ENST00000560502 KRTAP12-3P60328 96 aa5.14□□□□□ -1.59
LDLR-213ENST00000560502 LCE1DQ5T752 114 aa5.13□□□□□ -1.59
LDLR-213ENST00000560502 HMCN1Q96RW7 5635 aa5.08□□□□□ -1.6
LDLR-213ENST00000560502 KRTAP19-5Q3LI72 72 aa5.06□□□□□ -1.6
LDLR-213ENST00000560502 KRTAP15-1Q3LI76 137 aa5.04□□□□□ -1.6
LDLR-213ENST00000560502 LCE4AQ5TA78 99 aa5.04□□□□□ -1.6
LDLR-213ENST00000560502 MT1GP13640 62 aa5.03□□□□□ -1.6
LDLR-213ENST00000560502 AHNAK2Q8IVF2 5795 aa5.02□□□□□ -1.61
LDLR-213ENST00000560502 MT4P47944 62 aa5.01□□□□□ -1.61
LDLR-213ENST00000560502 KRTAP19-4Q3LI73 84 aa5□□□□□ -1.61
LDLR-213ENST00000560502 MT1MQ8N339 61 aa4.97□□□□□ -1.61
LDLR-213ENST00000560502 KRTAP5-10Q6L8G5 202 aa4.93□□□□□ -1.62
LDLR-213ENST00000560502 KRTAP5-4Q6L8H1 288 aa4.93□□□□□ -1.62
LDLR-213ENST00000560502 MT1LQ93083 61 aa4.91□□□□□ -1.62
LDLR-213ENST00000560502 KRTAP4-6Q9BYQ5 205 aa4.86□□□□□ -1.63
LDLR-213ENST00000560502 KRTAP4-3Q9BYR4 195 aa4.85□□□□□ -1.63
LDLR-213ENST00000560502 SPRR5A0A1B0GTR4 108 aa4.83□□□□□ -1.64
LDLR-213ENST00000560502 LCE3CQ5T5A8 94 aa4.79□□□□□ -1.64
LDLR-213ENST00000560502 KRTAP5-7Q6L8G8 165 aa4.77□□□□□ -1.65
LDLR-213ENST00000560502 KRTAP5-3Q6L8H2 238 aa4.74□□□□□ -1.65
LDLR-213ENST00000560502 LUZP6Q538Z0 58 aa4.68□□□□□ -1.66
LDLR-213ENST00000560502 KRTAP20-2Q3LI61 65 aa4.65□□□□□ -1.67
LDLR-213ENST00000560502 KRTAP4-7Q9BYR0 210 aa4.65□□□□□ -1.67
LDLR-213ENST00000560502 KRTAP5-5Q701N2 237 aaPredicted RBP4.61□□□□□ -1.67
LDLR-213ENST00000560502 KRTAP12-4P60329 112 aa4.5□□□□□ -1.69
LDLR-213ENST00000560502 SYNE1Q8NF91 8797 aaKnown RBP4.49□□□□□ -1.69
LDLR-213ENST00000560502 NDUFAF8A1L188 74 aa4.45□□□□□ -1.7
LDLR-213ENST00000560502 KRTAP9-6A8MVA2 160 aa4.45□□□□□ -1.7
LDLR-213ENST00000560502 LOC100996750A0A140TA64 210 aa4.42□□□□□ -1.7
LDLR-213ENST00000560502 KRTAP4-11Q9BYQ6 195 aa4.31□□□□□ -1.72
LDLR-213ENST00000560502 KRTAP5-2Q701N4 177 aa4.28□□□□□ -1.72
LDLR-213ENST00000560502 AHNAKQ09666 5890 aaKnown RBP4.24□□□□□ -1.73
LDLR-213ENST00000560502 MUC5ACP98088 5654 aa4.21□□□□□ -1.74
LDLR-213ENST00000560502 KRTAP5-8O75690 187 aa4.19□□□□□ -1.74
LDLR-213ENST00000560502 MT1AP04731 61 aa4.18□□□□□ -1.74
LDLR-213ENST00000560502 KRTAP6-1Q3LI64 71 aa4.17□□□□□ -1.74
LDLR-213ENST00000560502 MUC5BQ9HC84 5762 aaPredicted RBP4.15□□□□□ -1.74
LDLR-213ENST00000560502 KRTAP9-4Q9BYQ2 154 aa4.06□□□□□ -1.76
LDLR-213ENST00000560502 OBSCNQ5VST9 7968 aa4.03□□□□□ -1.76
LDLR-213ENST00000560502 KRTAP6-2Q3LI66 62 aa4.03□□□□□ -1.76
LDLR-213ENST00000560502 A0A0A0MQY5 61 aa4.01□□□□□ -1.77
LDLR-213ENST00000560502 H3BS24 57 aa4.01□□□□□ -1.77
LDLR-213ENST00000560502 KRTAP9-9Q9BYP9 154 aa3.98□□□□□ -1.77
LDLR-213ENST00000560502 KRTAP5-1Q6L8H4 278 aa3.88□□□□□ -1.79
LDLR-213ENST00000560502 MT3P25713 68 aa3.81□□□□□ -1.8
LDLR-213ENST00000560502 INE1O15225 51 aa3.8□□□□□ -1.8
LDLR-213ENST00000560502 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
LDLR-213ENST00000560502 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
LDLR-213ENST00000560502 LCE3EQ5T5B0 92 aa3.51□□□□□ -1.85
LDLR-213ENST00000560502 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
LDLR-213ENST00000560502 LCE1BQ5T7P3 118 aa3.36□□□□□ -1.87
LDLR-213ENST00000560502 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
LDLR-213ENST00000560502 KRTAP4-12Q9BQ66 201 aa3.18□□□□□ -1.9
LDLR-213ENST00000560502 KRTAP5-11Q6L8G4 156 aa3.07□□□□□ -1.92
LDLR-213ENST00000560502 LCE1FQ5T754 118 aa3.03□□□□□ -1.92
LDLR-213ENST00000560502 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
LDLR-213ENST00000560502 PRM1P04553 51 aa3.01□□□□□ -1.93
LDLR-213ENST00000560502 PHGR1C9JFL3 82 aa2.85□□□□□ -1.95
LDLR-213ENST00000560502 KRTAP21-2Q3LI59 83 aa2.76□□□□□ -1.97
LDLR-213ENST00000560502 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
LDLR-213ENST00000560502 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
LDLR-213ENST00000560502 KRTAP21-1Q3LI58 79 aa2.18□□□□□ -2.06
LDLR-213ENST00000560502 MUC16Q8WXI7 14507 aa1.81□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 15.7 ms