RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 KRTAP10-5P60370 271 aa2.69□□□□□ -1.98
SPG11-221ENST00000560299 ROMO1P60602 79 aa2.68□□□□□ -1.98
SPG11-221ENST00000560299 KRTAP5-1Q6L8H4 278 aa2.68□□□□□ -1.98
SPG11-221ENST00000560299 KTN1-AS1Q86SY8 53 aa2.68□□□□□ -1.98
SPG11-221ENST00000560299 TNP1P09430 55 aa2.65□□□□□ -1.99
SPG11-221ENST00000560299 MT1XP80297 61 aa2.65□□□□□ -1.99
SPG11-221ENST00000560299 KRTAP5-9P26371 169 aa2.64□□□□□ -1.99
SPG11-221ENST00000560299 KRTAP2-2Q9BYT5 123 aa2.64□□□□□ -1.99
SPG11-221ENST00000560299 C10orf95Q9H7T3 257 aa2.64□□□□□ -1.99
SPG11-221ENST00000560299 KRTAP25-1Q3LHN0 102 aa2.63□□□□□ -1.99
SPG11-221ENST00000560299 PRAC1Q96KF2 57 aa2.63□□□□□ -1.99
SPG11-221ENST00000560299 KRTAP6-3Q3LI67 103 aa2.62□□□□□ -1.99
SPG11-221ENST00000560299 KRTAP5-4Q6L8H1 288 aa2.62□□□□□ -1.99
SPG11-221ENST00000560299 NEBP20929 6669 aa2.59□□□□□ -1.99
SPG11-221ENST00000560299 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
SPG11-221ENST00000560299 KMT2DO14686 5537 aa2.56□□□□□ -2
SPG11-221ENST00000560299 PP632Q6XCG6 107 aa2.55□□□□□ -2
SPG11-221ENST00000560299 MUC12Q9UKN1 5478 aa2.55□□□□□ -2
SPG11-221ENST00000560299 KRTAP10-12P60413 245 aa2.54□□□□□ -2
SPG11-221ENST00000560299 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
SPG11-221ENST00000560299 LUZP6Q538Z0 58 aa2.5□□□□□ -2.01
SPG11-221ENST00000560299 LCE3AQ5TA76 89 aa2.47□□□□□ -2.01
SPG11-221ENST00000560299 KRTAP20-1Q3LI63 56 aa2.46□□□□□ -2.02
SPG11-221ENST00000560299 KRTAP8-1Q8IUC2 63 aa2.46□□□□□ -2.02
SPG11-221ENST00000560299 KRTAP12-3P60328 96 aa2.41□□□□□ -2.02
SPG11-221ENST00000560299 SPRR2FQ96RM1 72 aa2.4□□□□□ -2.03
SPG11-221ENST00000560299 KRTAP19-5Q3LI72 72 aa2.39□□□□□ -2.03
SPG11-221ENST00000560299 KRTAP19-7Q3SYF9 63 aa2.36□□□□□ -2.03
SPG11-221ENST00000560299 OBSCNQ5VST9 7968 aa2.34□□□□□ -2.03
SPG11-221ENST00000560299 MT1EP04732 61 aa2.34□□□□□ -2.03
SPG11-221ENST00000560299 KRTAP2-3P0C7H8 128 aa2.34□□□□□ -2.03
SPG11-221ENST00000560299 KRTAP2-4Q9BYR9 128 aa2.34□□□□□ -2.03
SPG11-221ENST00000560299 SPRR2EP22531 72 aa2.33□□□□□ -2.04
SPG11-221ENST00000560299 SPRR2BP35325 72 aa2.33□□□□□ -2.04
SPG11-221ENST00000560299 SPRR2AP35326 72 aa2.33□□□□□ -2.04
SPG11-221ENST00000560299 KRTAP9-6A8MVA2 160 aa2.31□□□□□ -2.04
SPG11-221ENST00000560299 MT1LQ93083 61 aa2.29□□□□□ -2.04
SPG11-221ENST00000560299 MT1GP13640 62 aa2.28□□□□□ -2.04
SPG11-221ENST00000560299 KRTAP19-3Q7Z4W3 81 aa2.28□□□□□ -2.04
SPG11-221ENST00000560299 KRTAP2-1Q9BYU5 128 aa2.27□□□□□ -2.05
SPG11-221ENST00000560299 DSTQ03001 7570 aaKnown RBP2.26□□□□□ -2.05
SPG11-221ENST00000560299 SPRR2DP22532 72 aa2.26□□□□□ -2.05
SPG11-221ENST00000560299 KRTAP4-3Q9BYR4 195 aa2.26□□□□□ -2.05
SPG11-221ENST00000560299 MT3P25713 68 aa2.24□□□□□ -2.05
SPG11-221ENST00000560299 LCE3CQ5T5A8 94 aa2.24□□□□□ -2.05
SPG11-221ENST00000560299 NDUFAF8A1L188 74 aa2.23□□□□□ -2.05
SPG11-221ENST00000560299 KRTAP5-2Q701N4 177 aa2.21□□□□□ -2.06
SPG11-221ENST00000560299 MT1MQ8N339 61 aa2.21□□□□□ -2.06
SPG11-221ENST00000560299 GPR98Q8WXG9 6306 aa2.2□□□□□ -2.06
SPG11-221ENST00000560299 SPRR5A0A1B0GTR4 108 aa2.15□□□□□ -2.07
SPG11-221ENST00000560299 HMCN1Q96RW7 5635 aa2.06□□□□□ -2.08
SPG11-221ENST00000560299 KRTAP5-5Q701N2 237 aaPredicted RBP2.04□□□□□ -2.08
SPG11-221ENST00000560299 SYNE1Q8NF91 8797 aaKnown RBP1.97□□□□□ -2.09
SPG11-221ENST00000560299 MT1AP04731 61 aa1.96□□□□□ -2.1
SPG11-221ENST00000560299 KRTAP12-4P60329 112 aa1.95□□□□□ -2.1
SPG11-221ENST00000560299 LCE1FQ5T754 118 aa1.93□□□□□ -2.1
SPG11-221ENST00000560299 KRTAP5-10Q6L8G5 202 aa1.93□□□□□ -2.1
SPG11-221ENST00000560299 MT4P47944 62 aa1.92□□□□□ -2.1
SPG11-221ENST00000560299 KRTAP5-7Q6L8G8 165 aa1.92□□□□□ -2.1
SPG11-221ENST00000560299 AHNAK2Q8IVF2 5795 aa1.92□□□□□ -2.1
SPG11-221ENST00000560299 KRTAP20-2Q3LI61 65 aa1.91□□□□□ -2.1
SPG11-221ENST00000560299 KRTAP6-1Q3LI64 71 aa1.91□□□□□ -2.1
SPG11-221ENST00000560299 INE1O15225 51 aa1.89□□□□□ -2.11
SPG11-221ENST00000560299 KRTAP5-8O75690 187 aa1.88□□□□□ -2.11
SPG11-221ENST00000560299 KRTAP6-2Q3LI66 62 aa1.78□□□□□ -2.12
SPG11-221ENST00000560299 LCE1CQ5T751 118 aa1.75□□□□□ -2.13
SPG11-221ENST00000560299 LCE1BQ5T7P3 118 aa1.75□□□□□ -2.13
SPG11-221ENST00000560299 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
SPG11-221ENST00000560299 LCE3EQ5T5B0 92 aa1.69□□□□□ -2.14
SPG11-221ENST00000560299 LCE3DQ9BYE3 92 aa1.69□□□□□ -2.14
SPG11-221ENST00000560299 MUC5ACP98088 5654 aa1.66□□□□□ -2.14
SPG11-221ENST00000560299 MUC5BQ9HC84 5762 aaPredicted RBP1.64□□□□□ -2.15
SPG11-221ENST00000560299 MUC19Q7Z5P9 8384 aa1.53□□□□□ -2.16
SPG11-221ENST00000560299 PRM1P04553 51 aa1.37□□□□□ -2.19
SPG11-221ENST00000560299 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
SPG11-221ENST00000560299 PHGR1C9JFL3 82 aa1.16□□□□□ -2.22
SPG11-221ENST00000560299 KRTAP21-1Q3LI58 79 aa0.9□□□□□ -2.27
SPG11-221ENST00000560299 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 33.1 ms