RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 KRTAP10-12P60413 245 aa3.67□□□□□ -1.82
LDLR-210ENST00000559340 KRTAP10-7P60409 375 aaPredicted RBP3.66□□□□□ -1.82
LDLR-210ENST00000559340 C10orf95Q9H7T3 257 aa3.65□□□□□ -1.83
LDLR-210ENST00000559340 KMT2DO14686 5537 aa3.65□□□□□ -1.83
LDLR-210ENST00000559340 KRTAP2-3P0C7H8 128 aa3.64□□□□□ -1.83
LDLR-210ENST00000559340 KRTAP2-4Q9BYR9 128 aa3.64□□□□□ -1.83
LDLR-210ENST00000559340 MDN1Q9NU22 5596 aa3.63□□□□□ -1.83
LDLR-210ENST00000559340 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
LDLR-210ENST00000559340 KRTAP25-1Q3LHN0 102 aa3.59□□□□□ -1.83
LDLR-210ENST00000559340 ROMO1P60602 79 aa3.56□□□□□ -1.84
LDLR-210ENST00000559340 A0A0A0MQY5 61 aa3.55□□□□□ -1.84
LDLR-210ENST00000559340 SPRR2EP22531 72 aa3.54□□□□□ -1.84
LDLR-210ENST00000559340 SPRR2BP35325 72 aa3.54□□□□□ -1.84
LDLR-210ENST00000559340 SPRR2AP35326 72 aa3.54□□□□□ -1.84
LDLR-210ENST00000559340 SPRR2FQ96RM1 72 aa3.54□□□□□ -1.84
LDLR-210ENST00000559340 KRTAP2-2Q9BYT5 123 aa3.52□□□□□ -1.85
LDLR-210ENST00000559340 KRTAP2-1Q9BYU5 128 aa3.52□□□□□ -1.85
LDLR-210ENST00000559340 KRTAP23-1A1A580 65 aa3.49□□□□□ -1.85
LDLR-210ENST00000559340 LCE3AQ5TA76 89 aa3.48□□□□□ -1.85
LDLR-210ENST00000559340 KRTAP5-3Q6L8H2 238 aa3.47□□□□□ -1.85
LDLR-210ENST00000559340 LCE1AQ5T7P2 110 aa3.46□□□□□ -1.86
LDLR-210ENST00000559340 PP632Q6XCG6 107 aa3.44□□□□□ -1.86
LDLR-210ENST00000559340 SPRR2DP22532 72 aa3.43□□□□□ -1.86
LDLR-210ENST00000559340 KRTAP19-5Q3LI72 72 aa3.42□□□□□ -1.86
LDLR-210ENST00000559340 KRTAP19-7Q3SYF9 63 aa3.42□□□□□ -1.86
LDLR-210ENST00000559340 PRAC1Q96KF2 57 aa3.41□□□□□ -1.86
LDLR-210ENST00000559340 MT1EP04732 61 aa3.39□□□□□ -1.87
LDLR-210ENST00000559340 KRTAP12-3P60328 96 aa3.38□□□□□ -1.87
LDLR-210ENST00000559340 KRTAP19-3Q7Z4W3 81 aa3.33□□□□□ -1.88
LDLR-210ENST00000559340 MT1GP13640 62 aa3.32□□□□□ -1.88
LDLR-210ENST00000559340 MT1LQ93083 61 aa3.29□□□□□ -1.88
LDLR-210ENST00000559340 GPR98Q8WXG9 6306 aa3.27□□□□□ -1.89
LDLR-210ENST00000559340 KRTAP15-1Q3LI76 137 aa3.26□□□□□ -1.89
LDLR-210ENST00000559340 MT1MQ8N339 61 aa3.21□□□□□ -1.9
LDLR-210ENST00000559340 DSTQ03001 7570 aaKnown RBP3.21□□□□□ -1.9
LDLR-210ENST00000559340 LCE3CQ5T5A8 94 aa3.14□□□□□ -1.91
LDLR-210ENST00000559340 LUZP6Q538Z0 58 aa3.12□□□□□ -1.91
LDLR-210ENST00000559340 NDUFAF8A1L188 74 aa3.08□□□□□ -1.92
LDLR-210ENST00000559340 KRTAP4-3Q9BYR4 195 aa3.08□□□□□ -1.92
LDLR-210ENST00000559340 MT4P47944 62 aa3□□□□□ -1.93
LDLR-210ENST00000559340 HMCN1Q96RW7 5635 aa2.99□□□□□ -1.93
LDLR-210ENST00000559340 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
LDLR-210ENST00000559340 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
LDLR-210ENST00000559340 AHNAK2Q8IVF2 5795 aa2.93□□□□□ -1.94
LDLR-210ENST00000559340 KRTAP5-5Q701N2 237 aaPredicted RBP2.9□□□□□ -1.95
LDLR-210ENST00000559340 KRTAP5-7Q6L8G8 165 aa2.89□□□□□ -1.95
LDLR-210ENST00000559340 KRTAP9-6A8MVA2 160 aa2.87□□□□□ -1.95
LDLR-210ENST00000559340 SPRR5A0A1B0GTR4 108 aa2.85□□□□□ -1.95
LDLR-210ENST00000559340 KRTAP12-4P60329 112 aa2.85□□□□□ -1.95
LDLR-210ENST00000559340 MT1AP04731 61 aa2.82□□□□□ -1.96
LDLR-210ENST00000559340 KRTAP20-2Q3LI61 65 aa2.77□□□□□ -1.97
LDLR-210ENST00000559340 KRTAP6-1Q3LI64 71 aa2.76□□□□□ -1.97
LDLR-210ENST00000559340 SYNE1Q8NF91 8797 aaKnown RBP2.73□□□□□ -1.97
LDLR-210ENST00000559340 INE1O15225 51 aa2.64□□□□□ -1.99
LDLR-210ENST00000559340 MT3P25713 68 aa2.6□□□□□ -1.99
LDLR-210ENST00000559340 KRTAP6-2Q3LI66 62 aa2.59□□□□□ -1.99
LDLR-210ENST00000559340 KRTAP5-2Q701N4 177 aa2.59□□□□□ -1.99
LDLR-210ENST00000559340 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
LDLR-210ENST00000559340 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
LDLR-210ENST00000559340 KRTAP5-8O75690 187 aa2.49□□□□□ -2.01
LDLR-210ENST00000559340 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
LDLR-210ENST00000559340 AHNAKQ09666 5890 aaKnown RBP2.48□□□□□ -2.01
LDLR-210ENST00000559340 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
LDLR-210ENST00000559340 LCE1EQ5T753 118 aa2.45□□□□□ -2.02
LDLR-210ENST00000559340 OBSCNQ5VST9 7968 aa2.37□□□□□ -2.03
LDLR-210ENST00000559340 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
LDLR-210ENST00000559340 KRTAP5-1Q6L8H4 278 aa2.3□□□□□ -2.04
LDLR-210ENST00000559340 LCE3EQ5T5B0 92 aa2.25□□□□□ -2.05
LDLR-210ENST00000559340 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.07
LDLR-210ENST00000559340 LCE1CQ5T751 118 aa2.14□□□□□ -2.07
LDLR-210ENST00000559340 LCE1BQ5T7P3 118 aa2.14□□□□□ -2.07
LDLR-210ENST00000559340 LCE1FQ5T754 118 aa1.95□□□□□ -2.1
LDLR-210ENST00000559340 PRM1P04553 51 aa1.81□□□□□ -2.12
LDLR-210ENST00000559340 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
LDLR-210ENST00000559340 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
LDLR-210ENST00000559340 MUC19Q7Z5P9 8384 aa1.45□□□□□ -2.18
LDLR-210ENST00000559340 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.19
LDLR-210ENST00000559340 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 206 ms