RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CCDC18Q5T9S5 1454 aa-3.4□□□□□ -2.95
VPS13C-205ENST00000558088 SCRIBQ14160 1630 aa-3.4□□□□□ -2.95
VPS13C-205ENST00000558088 IGIPA6NJ69 53 aa-3.4□□□□□ -2.95
VPS13C-205ENST00000558088 ABCA9Q8IUA7 1624 aa-3.41□□□□□ -2.95
VPS13C-205ENST00000558088 LMO7Q8WWI1 1683 aa-3.41□□□□□ -2.96
VPS13C-205ENST00000558088 KRTAP19-2Q3LHN2 52 aa-3.42□□□□□ -2.96
VPS13C-205ENST00000558088 RHPN1-AS1Q9BWJ2 59 aa-3.43□□□□□ -2.96
VPS13C-205ENST00000558088 ABCA6Q8N139 1617 aa-3.44□□□□□ -2.96
VPS13C-205ENST00000558088 TFF3Q07654 80 aa-3.44□□□□□ -2.96
VPS13C-205ENST00000558088 SMIM2Q9BVW6 85 aa-3.45□□□□□ -2.96
VPS13C-205ENST00000558088 CDH23Q9H251 3354 aa-3.45□□□□□ -2.96
VPS13C-205ENST00000558088 SYCP2Q9BX26 1530 aa-3.45□□□□□ -2.96
VPS13C-205ENST00000558088 DUOX2Q9NRD8 1548 aa-3.46□□□□□ -2.96
VPS13C-205ENST00000558088 HTN1P15515 57 aa-3.48□□□□□ -2.97
VPS13C-205ENST00000558088 UGGT1Q9NYU2 1555 aa-3.51□□□□□ -2.97
VPS13C-205ENST00000558088 BRCA2P51587 3418 aa-3.54□□□□□ -2.98
VPS13C-205ENST00000558088 IQGAP3Q86VI3 1631 aa-3.55□□□□□ -2.98
VPS13C-205ENST00000558088 UGGT2Q9NYU1 1516 aa-3.55□□□□□ -2.98
VPS13C-205ENST00000558088 AGLP35573 1532 aa-3.57□□□□□ -2.98
VPS13C-205ENST00000558088 VPS13AQ96RL7 3174 aa-3.57□□□□□ -2.98
VPS13C-205ENST00000558088 PDCD5O14737 125 aa-3.58□□□□□ -2.98
VPS13C-205ENST00000558088 PLNP26678 52 aa-3.58□□□□□ -2.98
VPS13C-205ENST00000558088 SMCO4Q9NRQ5 59 aa-3.59□□□□□ -2.98
VPS13C-205ENST00000558088 RB1CC1Q8TDY2 1594 aa-3.6□□□□□ -2.99
VPS13C-205ENST00000558088 LINC01590Q5TEZ4 76 aa-3.61□□□□□ -2.99
VPS13C-205ENST00000558088 A0A096LNI7 61 aa-3.63□□□□□ -2.99
VPS13C-205ENST00000558088 CPS1P31327 1500 aa-3.64□□□□□ -2.99
VPS13C-205ENST00000558088 DDX60Q8IY21 1712 aaKnown RBP-3.68□□□□□ -3
VPS13C-205ENST00000558088 TRPM2O94759 1503 aa-3.69□□□□□ -3
VPS13C-205ENST00000558088 TOMM7Q9P0U1 55 aa-3.69□□□□□ -3
VPS13C-205ENST00000558088 CLTCL1P53675 1640 aa-3.72□□□□□ -3
VPS13C-205ENST00000558088 ABCA5Q8WWZ7 1642 aa-3.73□□□□□ -3.01
VPS13C-205ENST00000558088 DEFB124Q8NES8 71 aa-3.76□□□□□ -3.01
VPS13C-205ENST00000558088 ABCA10Q8WWZ4 1543 aa-3.79□□□□□ -3.02
VPS13C-205ENST00000558088 EFCAB5A4FU69 1503 aa-3.8□□□□□ -3.02
VPS13C-205ENST00000558088 PRXQ9BXM0 1461 aa-3.81□□□□□ -3.02
VPS13C-205ENST00000558088 NFAT5O94916 1531 aa-3.81□□□□□ -3.02
VPS13C-205ENST00000558088 UTRNP46939 3433 aa-3.86□□□□□ -3.03
VPS13C-205ENST00000558088 IQGAP1P46940 1657 aa-3.86□□□□□ -3.03
VPS13C-205ENST00000558088 ADCY10Q96PN6 1610 aa-3.87□□□□□ -3.03
VPS13C-205ENST00000558088 A0A087WWC5 75 aa-3.87□□□□□ -3.03
VPS13C-205ENST00000558088 NDUFA1O15239 70 aa-3.88□□□□□ -3.03
VPS13C-205ENST00000558088 LINC01556Q5JQF7 62 aa-3.88□□□□□ -3.03
VPS13C-205ENST00000558088 SMIM5Q71RC9 77 aa-3.88□□□□□ -3.03
VPS13C-205ENST00000558088 DEFB104AQ8WTQ1 72 aa-3.88□□□□□ -3.03
VPS13C-205ENST00000558088 FANCD2Q9BXW9 1451 aa-3.99□□□□□ -3.05
VPS13C-205ENST00000558088 ABCC8Q09428 1581 aa-4.01□□□□□ -3.05
VPS13C-205ENST00000558088 CMC2Q9NRP2 79 aa-4.01□□□□□ -3.05
VPS13C-205ENST00000558088 DUOX1Q9NRD9 1551 aa-4.06□□□□□ -3.06
VPS13C-205ENST00000558088 ERICH3Q5RHP9 1530 aa-4.09□□□□□ -3.06
VPS13C-205ENST00000558088 TOP2AP11388 1531 aaKnown RBP-4.1□□□□□ -3.07
VPS13C-205ENST00000558088 H3BUX3 64 aa-4.13□□□□□ -3.07
VPS13C-205ENST00000558088 GOLGB1Q14789 3259 aaKnown RBP-4.18□□□□□ -3.08
VPS13C-205ENST00000558088 SAMD9LQ8IVG5 1584 aa-4.2□□□□□ -3.08
VPS13C-205ENST00000558088 RPL39P62891 51 aaKnown RBP-4.22□□□□□ -3.08
VPS13C-205ENST00000558088 ATP7AQ04656 1500 aa-4.22□□□□□ -3.09
VPS13C-205ENST00000558088 APELAP0DMC3 54 aa-4.31□□□□□ -3.1
VPS13C-205ENST00000558088 RPL39LQ96EH5 51 aaKnown RBP-4.33□□□□□ -3.1
VPS13C-205ENST00000558088 MROH2BQ7Z745 1585 aa-4.34□□□□□ -3.1
VPS13C-205ENST00000558088 A0A096LPF7 62 aa-4.39□□□□□ -3.11
VPS13C-205ENST00000558088 HTN3P15516 51 aa-4.45□□□□□ -3.12
VPS13C-205ENST00000558088 PRCDQ00LT1 54 aa-4.57□□□□□ -3.14
VPS13C-205ENST00000558088 SMIM31A0A1B0GVY4 71 aa-4.59□□□□□ -3.14
VPS13C-205ENST00000558088 K7EIM0 57 aa-4.59□□□□□ -3.14
VPS13C-205ENST00000558088 TMEM167AQ8TBQ9 72 aa-4.62□□□□□ -3.15
VPS13C-205ENST00000558088 SNRPGP15A8MWD9 76 aa-4.64□□□□□ -3.15
VPS13C-205ENST00000558088 Q9Y3F1 56 aa-4.68□□□□□ -3.16
VPS13C-205ENST00000558088 ARHGAP5-AS1Q96IT6 56 aa-4.69□□□□□ -3.16
VPS13C-205ENST00000558088 IQGAP2Q13576 1575 aa-4.74□□□□□ -3.17
VPS13C-205ENST00000558088 H3BSH0 61 aa-4.76□□□□□ -3.17
VPS13C-205ENST00000558088 TOMM5Q8N4H5 51 aa-4.83□□□□□ -3.18
VPS13C-205ENST00000558088 COX14Q96I36 57 aa-4.96□□□□□ -3.2
VPS13C-205ENST00000558088 SNRPGP62308 76 aaKnown RBP-5.06□□□□□ -3.22
VPS13C-205ENST00000558088 RPL39P5Q59GN2 51 aa-5.13□□□□□ -3.23
VPS13C-205ENST00000558088 DEFB108AA8MXU0 73 aa-5.17□□□□□ -3.24
VPS13C-205ENST00000558088 GCC2Q8IWJ2 1684 aa-5.28□□□□□ -3.25
VPS13C-205ENST00000558088 DEFB108BQ8NET1 73 aa-5.33□□□□□ -3.26
VPS13C-205ENST00000558088 STATHP02808 62 aa-5.51□□□□□ -3.29
Retrieved 78 of 20,778 RNA–protein pairs in 82.4 ms