RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 KRTAP6-3Q3LI67 103 aa4.73□□□□□ -1.65
TPM1-209ENST00000558072 LCE3AQ5TA76 89 aa4.73□□□□□ -1.65
TPM1-209ENST00000558072 KTN1-AS1Q86SY8 53 aa4.73□□□□□ -1.65
TPM1-209ENST00000558072 LCE5AQ5TCM9 118 aa4.66□□□□□ -1.66
TPM1-209ENST00000558072 SPRR2FQ96RM1 72 aa4.66□□□□□ -1.66
TPM1-209ENST00000558072 KRTAP5-9P26371 169 aa4.65□□□□□ -1.67
TPM1-209ENST00000558072 KRTAP12-3P60328 96 aa4.61□□□□□ -1.67
TPM1-209ENST00000558072 H3BS24 57 aa4.6□□□□□ -1.67
TPM1-209ENST00000558072 KRTAP19-5Q3LI72 72 aa4.6□□□□□ -1.67
TPM1-209ENST00000558072 KRTAP19-7Q3SYF9 63 aa4.58□□□□□ -1.68
TPM1-209ENST00000558072 MUC12Q9UKN1 5478 aa4.57□□□□□ -1.68
TPM1-209ENST00000558072 PRAC1Q96KF2 57 aa4.56□□□□□ -1.68
TPM1-209ENST00000558072 MT1EP04732 61 aa4.54□□□□□ -1.68
TPM1-209ENST00000558072 NEBP20929 6669 aa4.52□□□□□ -1.69
TPM1-209ENST00000558072 SPRR2EP22531 72 aa4.52□□□□□ -1.69
TPM1-209ENST00000558072 SPRR2BP35325 72 aa4.52□□□□□ -1.69
TPM1-209ENST00000558072 SPRR2AP35326 72 aa4.52□□□□□ -1.69
TPM1-209ENST00000558072 MDN1Q9NU22 5596 aa4.49□□□□□ -1.69
TPM1-209ENST00000558072 KRTAP15-1Q3LI76 137 aa4.49□□□□□ -1.69
TPM1-209ENST00000558072 LCE1AQ5T7P2 110 aa4.49□□□□□ -1.69
TPM1-209ENST00000558072 SVIPQ8NHG7 77 aa4.46□□□□□ -1.7
TPM1-209ENST00000558072 KRTAP19-3Q7Z4W3 81 aa4.44□□□□□ -1.7
TPM1-209ENST00000558072 MT1GP13640 62 aa4.43□□□□□ -1.7
TPM1-209ENST00000558072 KRTAP5-3Q6L8H2 238 aa4.43□□□□□ -1.7
TPM1-209ENST00000558072 MT1LQ93083 61 aa4.42□□□□□ -1.7
TPM1-209ENST00000558072 SPRR2DP22532 72 aa4.35□□□□□ -1.71
TPM1-209ENST00000558072 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
TPM1-209ENST00000558072 MT1MQ8N339 61 aa4.29□□□□□ -1.72
TPM1-209ENST00000558072 KRTAP4-3Q9BYR4 195 aa4.28□□□□□ -1.72
TPM1-209ENST00000558072 KRTAP20-1Q3LI63 56 aa4.26□□□□□ -1.73
TPM1-209ENST00000558072 KRTAP2-3P0C7H8 128 aa4.18□□□□□ -1.74
TPM1-209ENST00000558072 KRTAP2-4Q9BYR9 128 aa4.18□□□□□ -1.74
TPM1-209ENST00000558072 DSTQ03001 7570 aaKnown RBP4.11□□□□□ -1.75
TPM1-209ENST00000558072 SPRR5A0A1B0GTR4 108 aa4.07□□□□□ -1.76
TPM1-209ENST00000558072 KRTAP2-2Q9BYT5 123 aa4.07□□□□□ -1.76
TPM1-209ENST00000558072 KRTAP2-1Q9BYU5 128 aa4.07□□□□□ -1.76
TPM1-209ENST00000558072 LUZP6Q538Z0 58 aa4□□□□□ -1.77
TPM1-209ENST00000558072 KRTAP9-6A8MVA2 160 aa3.95□□□□□ -1.78
TPM1-209ENST00000558072 KRTAP5-5Q701N2 237 aaPredicted RBP3.87□□□□□ -1.79
TPM1-209ENST00000558072 MT4P47944 62 aa3.83□□□□□ -1.8
TPM1-209ENST00000558072 KRTAP5-4Q6L8H1 288 aa3.83□□□□□ -1.8
TPM1-209ENST00000558072 MT1AP04731 61 aa3.8□□□□□ -1.8
TPM1-209ENST00000558072 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
TPM1-209ENST00000558072 KRTAP6-1Q3LI64 71 aa3.72□□□□□ -1.81
TPM1-209ENST00000558072 SYNE1Q8NF91 8797 aaKnown RBP3.68□□□□□ -1.82
TPM1-209ENST00000558072 HMCN1Q96RW7 5635 aa3.67□□□□□ -1.82
TPM1-209ENST00000558072 KRTAP20-2Q3LI61 65 aa3.62□□□□□ -1.83
TPM1-209ENST00000558072 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
TPM1-209ENST00000558072 MT3P25713 68 aa3.5□□□□□ -1.85
TPM1-209ENST00000558072 AHNAK2Q8IVF2 5795 aa3.47□□□□□ -1.85
TPM1-209ENST00000558072 KRTAP6-2Q3LI66 62 aa3.47□□□□□ -1.85
TPM1-209ENST00000558072 KRTAP5-2Q701N4 177 aa3.43□□□□□ -1.86
TPM1-209ENST00000558072 GPR98Q8WXG9 6306 aa3.39□□□□□ -1.87
TPM1-209ENST00000558072 A0A0A0MQY5 61 aa3.33□□□□□ -1.88
TPM1-209ENST00000558072 KRTAP5-10Q6L8G5 202 aa3.32□□□□□ -1.88
TPM1-209ENST00000558072 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.31□□□□□ -1.88
TPM1-209ENST00000558072 LCE3DQ9BYE3 92 aa3.22□□□□□ -1.89
TPM1-209ENST00000558072 KRTAP5-11Q6L8G4 156 aa3.19□□□□□ -1.9
TPM1-209ENST00000558072 OBSCNQ5VST9 7968 aa3.14□□□□□ -1.91
TPM1-209ENST00000558072 LCE1EQ5T753 118 aa3.12□□□□□ -1.91
TPM1-209ENST00000558072 LCE3EQ5T5B0 92 aa3.11□□□□□ -1.91
TPM1-209ENST00000558072 KRTAP5-8O75690 187 aa3.1□□□□□ -1.91
TPM1-209ENST00000558072 KRTAP5-7Q6L8G8 165 aa3.1□□□□□ -1.91
TPM1-209ENST00000558072 INE1O15225 51 aa3.09□□□□□ -1.91
TPM1-209ENST00000558072 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
TPM1-209ENST00000558072 MUC5ACP98088 5654 aa2.9□□□□□ -1.95
TPM1-209ENST00000558072 LCE1CQ5T751 118 aa2.87□□□□□ -1.95
TPM1-209ENST00000558072 LCE1BQ5T7P3 118 aa2.87□□□□□ -1.95
TPM1-209ENST00000558072 MUC5BQ9HC84 5762 aaPredicted RBP2.74□□□□□ -1.97
TPM1-209ENST00000558072 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
TPM1-209ENST00000558072 AHNAKQ09666 5890 aaKnown RBP2.72□□□□□ -1.97
TPM1-209ENST00000558072 PRM1P04553 51 aa2.55□□□□□ -2
TPM1-209ENST00000558072 KRTAP21-2Q3LI59 83 aa2.42□□□□□ -2.02
TPM1-209ENST00000558072 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
TPM1-209ENST00000558072 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
TPM1-209ENST00000558072 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
TPM1-209ENST00000558072 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
TPM1-209ENST00000558072 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 8.8 ms