RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 SERP1Q9Y6X1 66 aa2.95□□□□□ -1.94
SCFD1-222ENST00000556768 KRTAP5-11Q6L8G4 156 aa2.94□□□□□ -1.94
SCFD1-222ENST00000556768 SPINT4Q6UDR6 99 aa2.92□□□□□ -1.94
SCFD1-222ENST00000556768 KRTAP10-7P60409 375 aaPredicted RBP2.91□□□□□ -1.94
SCFD1-222ENST00000556768 COA5Q86WW8 74 aa2.91□□□□□ -1.94
SCFD1-222ENST00000556768 COX7CP15954 63 aa2.89□□□□□ -1.95
SCFD1-222ENST00000556768 SPRR2DP22532 72 aa2.88□□□□□ -1.95
SCFD1-222ENST00000556768 KRTAP13-4Q3LI77 160 aa2.87□□□□□ -1.95
SCFD1-222ENST00000556768 KRTAP5-1Q6L8H4 278 aa2.86□□□□□ -1.95
SCFD1-222ENST00000556768 KRTAP2-1Q9BYU5 128 aa2.86□□□□□ -1.95
SCFD1-222ENST00000556768 A0A0D9SG42 100 aa2.86□□□□□ -1.95
SCFD1-222ENST00000556768 A0A1B0GU33 70 aa2.86□□□□□ -1.95
SCFD1-222ENST00000556768 KRTAP25-1Q3LHN0 102 aa2.85□□□□□ -1.95
SCFD1-222ENST00000556768 KRTAP4-4Q9BYR3 166 aa2.85□□□□□ -1.95
SCFD1-222ENST00000556768 H7BZZ5 65 aa2.84□□□□□ -1.96
SCFD1-222ENST00000556768 SPATA8Q6RVD6 105 aa2.82□□□□□ -1.96
SCFD1-222ENST00000556768 A0A1B0GU69 56 aa2.82□□□□□ -1.96
SCFD1-222ENST00000556768 CYSTM1Q9H1C7 97 aa2.77□□□□□ -1.97
SCFD1-222ENST00000556768 PRR15LQ9BU68 103 aa2.76□□□□□ -1.97
SCFD1-222ENST00000556768 DSTQ03001 7570 aaKnown RBP2.75□□□□□ -1.97
SCFD1-222ENST00000556768 KRTAP12-1P59990 96 aa2.75□□□□□ -1.97
SCFD1-222ENST00000556768 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
SCFD1-222ENST00000556768 ATP5EP56381 51 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-222ENST00000556768 KRTAP19-7Q3SYF9 63 aa2.72□□□□□ -1.97
SCFD1-222ENST00000556768 KRTAP19-3Q7Z4W3 81 aa2.71□□□□□ -1.98
SCFD1-222ENST00000556768 MT1EP04732 61 aa2.7□□□□□ -1.98
SCFD1-222ENST00000556768 CCDC179H3BU77 68 aa2.7□□□□□ -1.98
SCFD1-222ENST00000556768 TNP1P09430 55 aa2.7□□□□□ -1.98
SCFD1-222ENST00000556768 PP632Q6XCG6 107 aa2.69□□□□□ -1.98
SCFD1-222ENST00000556768 MT1GP13640 62 aa2.67□□□□□ -1.98
SCFD1-222ENST00000556768 KRTAP19-5Q3LI72 72 aa2.67□□□□□ -1.98
SCFD1-222ENST00000556768 KTN1-AS1Q86SY8 53 aa2.67□□□□□ -1.98
SCFD1-222ENST00000556768 KRTAP5-2Q701N4 177 aa2.65□□□□□ -1.98
SCFD1-222ENST00000556768 UQCR11O14957 56 aa2.65□□□□□ -1.99
SCFD1-222ENST00000556768 LINC01558Q9Y6Z2 57 aa2.65□□□□□ -1.99
SCFD1-222ENST00000556768 SPRR5A0A1B0GTR4 108 aa2.64□□□□□ -1.99
SCFD1-222ENST00000556768 TMEM258P61165 79 aa2.64□□□□□ -1.99
SCFD1-222ENST00000556768 C10orf95Q9H7T3 257 aa2.62□□□□□ -1.99
SCFD1-222ENST00000556768 LCE1EQ5T753 118 aa2.61□□□□□ -1.99
SCFD1-222ENST00000556768 LCE3AQ5TA76 89 aa2.61□□□□□ -1.99
SCFD1-222ENST00000556768 MT1LQ93083 61 aa2.58□□□□□ -2
SCFD1-222ENST00000556768 MT1MQ8N339 61 aa2.58□□□□□ -2
SCFD1-222ENST00000556768 MIR22HGQ0VDD5 57 aa2.56□□□□□ -2
SCFD1-222ENST00000556768 KRTAP12-3P60328 96 aa2.54□□□□□ -2
SCFD1-222ENST00000556768 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
SCFD1-222ENST00000556768 MT4P47944 62 aa2.52□□□□□ -2.01
SCFD1-222ENST00000556768 RPS28P62857 69 aaKnown RBP2.5□□□□□ -2.01
SCFD1-222ENST00000556768 KRTAP4-3Q9BYR4 195 aa2.49□□□□□ -2.01
SCFD1-222ENST00000556768 Q1T7F1 81 aa2.48□□□□□ -2.01
SCFD1-222ENST00000556768 KRTAP9-6A8MVA2 160 aa2.47□□□□□ -2.01
SCFD1-222ENST00000556768 CDC42SE1Q9NRR8 79 aa2.41□□□□□ -2.02
SCFD1-222ENST00000556768 KRTAP5-8O75690 187 aa2.4□□□□□ -2.02
SCFD1-222ENST00000556768 LCE3DQ9BYE3 92 aa2.4□□□□□ -2.02
SCFD1-222ENST00000556768 AHNAK2Q8IVF2 5795 aa2.4□□□□□ -2.03
SCFD1-222ENST00000556768 KRTAP12-4P60329 112 aa2.38□□□□□ -2.03
SCFD1-222ENST00000556768 ROMO1P60602 79 aa2.38□□□□□ -2.03
SCFD1-222ENST00000556768 KRTAP5-5Q701N2 237 aaPredicted RBP2.34□□□□□ -2.03
SCFD1-222ENST00000556768 BRK1Q8WUW1 75 aa2.34□□□□□ -2.03
SCFD1-222ENST00000556768 OBSCNQ5VST9 7968 aa2.34□□□□□ -2.04
SCFD1-222ENST00000556768 KRTAP20-2Q3LI61 65 aa2.33□□□□□ -2.04
SCFD1-222ENST00000556768 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
SCFD1-222ENST00000556768 SYNE1Q8NF91 8797 aaKnown RBP2.28□□□□□ -2.04
SCFD1-222ENST00000556768 KRTAP5-7Q6L8G8 165 aa2.25□□□□□ -2.05
SCFD1-222ENST00000556768 MT1AP04731 61 aa2.21□□□□□ -2.06
SCFD1-222ENST00000556768 KRTAP6-1Q3LI64 71 aa2.18□□□□□ -2.06
SCFD1-222ENST00000556768 KRTAP6-2Q3LI66 62 aa2.11□□□□□ -2.07
SCFD1-222ENST00000556768 INE1O15225 51 aa2.07□□□□□ -2.08
SCFD1-222ENST00000556768 MUC5BQ9HC84 5762 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-222ENST00000556768 AHNAKQ09666 5890 aaKnown RBP1.99□□□□□ -2.09
SCFD1-222ENST00000556768 MUC5ACP98088 5654 aa1.98□□□□□ -2.09
SCFD1-222ENST00000556768 LCE1BQ5T7P3 118 aa1.78□□□□□ -2.12
SCFD1-222ENST00000556768 LCE1CQ5T751 118 aa1.77□□□□□ -2.13
SCFD1-222ENST00000556768 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
SCFD1-222ENST00000556768 PHGR1C9JFL3 82 aa1.39□□□□□ -2.19
SCFD1-222ENST00000556768 MUC19Q7Z5P9 8384 aa1.39□□□□□ -2.19
SCFD1-222ENST00000556768 PRM1P04553 51 aa1.18□□□□□ -2.22
SCFD1-222ENST00000556768 KRTAP21-1Q3LI58 79 aa1.07□□□□□ -2.24
SCFD1-222ENST00000556768 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms