RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SPRR1AP35321 89 aa1.88□□□□□ -2.11
PRPF39-209ENST00000556353 FCGBPQ9Y6R7 5405 aaPredicted RBP1.87□□□□□ -2.11
PRPF39-209ENST00000556353 MT1HP80294 61 aa1.86□□□□□ -2.11
PRPF39-209ENST00000556353 KRTAP13-4Q3LI77 160 aa1.86□□□□□ -2.11
PRPF39-209ENST00000556353 LINC00575Q6W349 94 aa1.85□□□□□ -2.11
PRPF39-209ENST00000556353 SSBP3-AS1Q7Z2R9 100 aa1.85□□□□□ -2.11
PRPF39-209ENST00000556353 PLAC4Q8WY50 150 aa1.85□□□□□ -2.11
PRPF39-209ENST00000556353 Q6ZRX8 168 aa1.84□□□□□ -2.11
PRPF39-209ENST00000556353 TP53AIP1Q9HCN2 124 aa1.84□□□□□ -2.11
PRPF39-209ENST00000556353 SPINK1P00995 79 aa1.83□□□□□ -2.12
PRPF39-209ENST00000556353 MACF1Q9UPN3 7388 aaKnown RBP1.83□□□□□ -2.12
PRPF39-209ENST00000556353 RPS29P62273 56 aaKnown RBP1.82□□□□□ -2.12
PRPF39-209ENST00000556353 PCOTHQ58A44 107 aa1.81□□□□□ -2.12
PRPF39-209ENST00000556353 COX6B2Q6YFQ2 88 aa1.81□□□□□ -2.12
PRPF39-209ENST00000556353 C9orf92A6NGG3 77 aa1.8□□□□□ -2.12
PRPF39-209ENST00000556353 IGLV5-48A0A075B6I7 105 aa1.79□□□□□ -2.12
PRPF39-209ENST00000556353 SPRR1BP22528 89 aa1.79□□□□□ -2.12
PRPF39-209ENST00000556353 K7EQZ3 153 aa1.78□□□□□ -2.12
PRPF39-209ENST00000556353 RPL37P61927 97 aaKnown RBP1.77□□□□□ -2.13
PRPF39-209ENST00000556353 CRIPTQ9P021 101 aa1.77□□□□□ -2.13
PRPF39-209ENST00000556353 NEBP20929 6669 aa1.77□□□□□ -2.13
PRPF39-209ENST00000556353 MUC12Q9UKN1 5478 aa1.75□□□□□ -2.13
PRPF39-209ENST00000556353 DEFB105AQ8NG35 78 aa1.74□□□□□ -2.13
PRPF39-209ENST00000556353 MT2AP02795 61 aa1.73□□□□□ -2.13
PRPF39-209ENST00000556353 MRPL34Q9BQ48 92 aaKnown RBP1.73□□□□□ -2.13
PRPF39-209ENST00000556353 H0YAA0 97 aa1.72□□□□□ -2.13
PRPF39-209ENST00000556353 M0R2T5 61 aa1.72□□□□□ -2.13
PRPF39-209ENST00000556353 MT1FP04733 61 aa1.72□□□□□ -2.13
PRPF39-209ENST00000556353 MDN1Q9NU22 5596 aa1.7□□□□□ -2.14
PRPF39-209ENST00000556353 WFDC13Q8IUB5 93 aa1.7□□□□□ -2.14
PRPF39-209ENST00000556353 KMT2DO14686 5537 aa1.66□□□□□ -2.14
PRPF39-209ENST00000556353 MMP24-AS1A0A0U1RRL7 71 aa1.66□□□□□ -2.14
PRPF39-209ENST00000556353 H1FX-AS1Q4G0G2 97 aa1.66□□□□□ -2.14
PRPF39-209ENST00000556353 KRTAP19-6Q3LI70 58 aa1.65□□□□□ -2.15
PRPF39-209ENST00000556353 KRTAP12-1P59990 96 aa1.61□□□□□ -2.15
PRPF39-209ENST00000556353 C10orf95Q9H7T3 257 aa1.6□□□□□ -2.15
PRPF39-209ENST00000556353 MT1BP07438 61 aa1.56□□□□□ -2.16
PRPF39-209ENST00000556353 KRTAP19-8Q3LI54 63 aa1.52□□□□□ -2.17
PRPF39-209ENST00000556353 SPRR2GQ9BYE4 73 aa1.51□□□□□ -2.17
PRPF39-209ENST00000556353 KRTAP20-1Q3LI63 56 aa1.5□□□□□ -2.17
PRPF39-209ENST00000556353 S4R3F8 94 aa1.5□□□□□ -2.17
PRPF39-209ENST00000556353 GPR98Q8WXG9 6306 aa1.48□□□□□ -2.17
PRPF39-209ENST00000556353 MT1XP80297 61 aa1.44□□□□□ -2.18
PRPF39-209ENST00000556353 SPRR2FQ96RM1 72 aa1.43□□□□□ -2.18
PRPF39-209ENST00000556353 DSTQ03001 7570 aaKnown RBP1.43□□□□□ -2.18
PRPF39-209ENST00000556353 KRTAP2-3P0C7H8 128 aa1.42□□□□□ -2.18
PRPF39-209ENST00000556353 SPRR2EP22531 72 aa1.42□□□□□ -2.18
PRPF39-209ENST00000556353 SPRR2BP35325 72 aa1.42□□□□□ -2.18
PRPF39-209ENST00000556353 SPRR2AP35326 72 aa1.42□□□□□ -2.18
PRPF39-209ENST00000556353 KRTAP2-4Q9BYR9 128 aa1.42□□□□□ -2.18
PRPF39-209ENST00000556353 AHNAK2Q8IVF2 5795 aa1.39□□□□□ -2.19
PRPF39-209ENST00000556353 KRTAP8-1Q8IUC2 63 aa1.38□□□□□ -2.19
PRPF39-209ENST00000556353 M0QZ58 72 aa1.37□□□□□ -2.19
PRPF39-209ENST00000556353 SPRR2DP22532 72 aa1.37□□□□□ -2.19
PRPF39-209ENST00000556353 KRTAP2-1Q9BYU5 128 aa1.37□□□□□ -2.19
PRPF39-209ENST00000556353 A0A0D9SG42 100 aa1.36□□□□□ -2.19
PRPF39-209ENST00000556353 KRTAP19-7Q3SYF9 63 aa1.3□□□□□ -2.2
PRPF39-209ENST00000556353 MT1EP04732 61 aa1.28□□□□□ -2.2
PRPF39-209ENST00000556353 KRTAP19-3Q7Z4W3 81 aa1.26□□□□□ -2.21
PRPF39-209ENST00000556353 KRTAP5-10Q6L8G5 202 aa1.25□□□□□ -2.21
PRPF39-209ENST00000556353 MT4P47944 62 aa1.22□□□□□ -2.21
PRPF39-209ENST00000556353 KRTAP19-5Q3LI72 72 aa1.22□□□□□ -2.21
PRPF39-209ENST00000556353 MT1MQ8N339 61 aa1.22□□□□□ -2.21
PRPF39-209ENST00000556353 TNP1P09430 55 aa1.21□□□□□ -2.22
PRPF39-209ENST00000556353 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
PRPF39-209ENST00000556353 MT1LQ93083 61 aa1.2□□□□□ -2.22
PRPF39-209ENST00000556353 SYNE1Q8NF91 8797 aaKnown RBP1.2□□□□□ -2.22
PRPF39-209ENST00000556353 MT1GP13640 62 aa1.18□□□□□ -2.22
PRPF39-209ENST00000556353 MUC5BQ9HC84 5762 aaPredicted RBP1.17□□□□□ -2.22
PRPF39-209ENST00000556353 AHNAKQ09666 5890 aaKnown RBP1.17□□□□□ -2.22
PRPF39-209ENST00000556353 KRTAP20-2Q3LI61 65 aa1.14□□□□□ -2.23
PRPF39-209ENST00000556353 MUC5ACP98088 5654 aa1.11□□□□□ -2.23
PRPF39-209ENST00000556353 KRTAP6-1Q3LI64 71 aa1.04□□□□□ -2.24
PRPF39-209ENST00000556353 MT1AP04731 61 aa1□□□□□ -2.25
PRPF39-209ENST00000556353 KRTAP6-2Q3LI66 62 aa0.99□□□□□ -2.25
PRPF39-209ENST00000556353 PRM1P04553 51 aa0.95□□□□□ -2.26
PRPF39-209ENST00000556353 KRTAP21-1Q3LI58 79 aa0.76□□□□□ -2.29
PRPF39-209ENST00000556353 PHGR1C9JFL3 82 aa0.68□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 106.1 ms