RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 DEFB131AP59861 70 aa-1.8□□□□□ -2.7
SCFD1-209ENST00000553280 ERICH3Q5RHP9 1530 aa-1.81□□□□□ -2.7
SCFD1-209ENST00000553280 ADCY10Q96PN6 1610 aa-1.82□□□□□ -2.7
SCFD1-209ENST00000553280 CEP350Q5VT06 3117 aa-1.85□□□□□ -2.71
SCFD1-209ENST00000553280 CENPEQ02224 2701 aa-1.86□□□□□ -2.71
SCFD1-209ENST00000553280 NRXN3Q9Y4C0 1643 aa-1.87□□□□□ -2.71
SCFD1-209ENST00000553280 MROH2AA6NES4 1674 aa-1.88□□□□□ -2.71
SCFD1-209ENST00000553280 TFF3Q07654 80 aa-1.89□□□□□ -2.71
SCFD1-209ENST00000553280 EP400Q96L91 3159 aa-1.89□□□□□ -2.71
SCFD1-209ENST00000553280 CEP250Q9BV73 2442 aa-1.89□□□□□ -2.71
SCFD1-209ENST00000553280 WDFY4Q6ZS81 3184 aa-1.91□□□□□ -2.71
SCFD1-209ENST00000553280 ABCC8Q09428 1581 aa-1.91□□□□□ -2.72
SCFD1-209ENST00000553280 MUC3AQ02505 3323 aa-1.93□□□□□ -2.72
SCFD1-209ENST00000553280 CMC2Q9NRP2 79 aa-1.96□□□□□ -2.72
SCFD1-209ENST00000553280 IQGAP1P46940 1657 aa-1.97□□□□□ -2.73
SCFD1-209ENST00000553280 FANCD2Q9BXW9 1451 aa-1.98□□□□□ -2.73
SCFD1-209ENST00000553280 SMIM2Q9BVW6 85 aa-1.98□□□□□ -2.73
SCFD1-209ENST00000553280 DCHS1Q96JQ0 3298 aa-1.99□□□□□ -2.73
SCFD1-209ENST00000553280 TTTY10Q9BZA0 68 aa-1.99□□□□□ -2.73
SCFD1-209ENST00000553280 DNAH14Q0VDD8 3507 aa-2□□□□□ -2.73
SCFD1-209ENST00000553280 DDX60Q8IY21 1712 aaKnown RBP-2.04□□□□□ -2.74
SCFD1-209ENST00000553280 MKI67P46013 3256 aaKnown RBP-2.06□□□□□ -2.74
SCFD1-209ENST00000553280 TRPM2O94759 1503 aa-2.06□□□□□ -2.74
SCFD1-209ENST00000553280 NFAT5O94916 1531 aa-2.07□□□□□ -2.74
SCFD1-209ENST00000553280 USP34Q70CQ2 3546 aa-2.07□□□□□ -2.74
SCFD1-209ENST00000553280 DEFB133Q30KQ1 61 aa-2.1□□□□□ -2.75
SCFD1-209ENST00000553280 RHPN1-AS1Q9BWJ2 59 aa-2.11□□□□□ -2.75
SCFD1-209ENST00000553280 CLTCL1P53675 1640 aa-2.11□□□□□ -2.75
SCFD1-209ENST00000553280 CFAP47Q6ZTR5 3102 aa-2.11□□□□□ -2.75
SCFD1-209ENST00000553280 XIRP2A4UGR9 3374 aa-2.13□□□□□ -2.75
SCFD1-209ENST00000553280 TOMM7Q9P0U1 55 aa-2.14□□□□□ -2.75
SCFD1-209ENST00000553280 DNAH12Q6ZR08 3092 aa-2.15□□□□□ -2.75
SCFD1-209ENST00000553280 NDUFA1O15239 70 aa-2.15□□□□□ -2.75
SCFD1-209ENST00000553280 LINC01590Q5TEZ4 76 aa-2.15□□□□□ -2.75
SCFD1-209ENST00000553280 LOC400499M0QZD8 3231 aa-2.16□□□□□ -2.76
SCFD1-209ENST00000553280 UNC80Q8N2C7 3258 aa-2.16□□□□□ -2.76
SCFD1-209ENST00000553280 HTN1P15515 57 aa-2.18□□□□□ -2.76
SCFD1-209ENST00000553280 CD52P31358 61 aa-2.19□□□□□ -2.76
SCFD1-209ENST00000553280 A0A096LNI7 61 aa-2.2□□□□□ -2.76
SCFD1-209ENST00000553280 ASPMQ8IZT6 3477 aa-2.21□□□□□ -2.76
SCFD1-209ENST00000553280 KRTAP19-2Q3LHN2 52 aa-2.22□□□□□ -2.76
SCFD1-209ENST00000553280 BRCA2P51587 3418 aa-2.27□□□□□ -2.77
SCFD1-209ENST00000553280 CENPFP49454 3210 aa-2.3□□□□□ -2.78
SCFD1-209ENST00000553280 VCANP13611 3396 aa-2.3□□□□□ -2.78
SCFD1-209ENST00000553280 DEFB124Q8NES8 71 aa-2.31□□□□□ -2.78
SCFD1-209ENST00000553280 DUOX1Q9NRD9 1551 aa-2.34□□□□□ -2.78
SCFD1-209ENST00000553280 SNRPGP15A8MWD9 76 aa-2.34□□□□□ -2.78
SCFD1-209ENST00000553280 CDH23Q9H251 3354 aa-2.35□□□□□ -2.78
SCFD1-209ENST00000553280 RPL39P62891 51 aaKnown RBP-2.37□□□□□ -2.79
SCFD1-209ENST00000553280 SAMD9LQ8IVG5 1584 aa-2.37□□□□□ -2.79
SCFD1-209ENST00000553280 TOP2AP11388 1531 aaKnown RBP-2.42□□□□□ -2.8
SCFD1-209ENST00000553280 VPS13AQ96RL7 3174 aa-2.43□□□□□ -2.8
SCFD1-209ENST00000553280 RPL39LQ96EH5 51 aaKnown RBP-2.45□□□□□ -2.8
SCFD1-209ENST00000553280 LINC01556Q5JQF7 62 aa-2.48□□□□□ -2.81
SCFD1-209ENST00000553280 ATP7AQ04656 1500 aa-2.51□□□□□ -2.81
SCFD1-209ENST00000553280 DEFB104AQ8WTQ1 72 aa-2.51□□□□□ -2.81
SCFD1-209ENST00000553280 H3BUX3 64 aa-2.54□□□□□ -2.82
SCFD1-209ENST00000553280 MROH2BQ7Z745 1585 aa-2.55□□□□□ -2.82
SCFD1-209ENST00000553280 IQGAP2Q13576 1575 aa-2.56□□□□□ -2.82
SCFD1-209ENST00000553280 UTRNP46939 3433 aa-2.65□□□□□ -2.83
SCFD1-209ENST00000553280 TOMM5Q8N4H5 51 aa-2.68□□□□□ -2.84
SCFD1-209ENST00000553280 K7EIM0 57 aa-2.72□□□□□ -2.84
SCFD1-209ENST00000553280 APELAP0DMC3 54 aa-2.73□□□□□ -2.85
SCFD1-209ENST00000553280 A0A096LPF7 62 aa-2.76□□□□□ -2.85
SCFD1-209ENST00000553280 ARHGAP5-AS1Q96IT6 56 aa-2.8□□□□□ -2.86
SCFD1-209ENST00000553280 PRCDQ00LT1 54 aa-2.82□□□□□ -2.86
SCFD1-209ENST00000553280 TMEM167AQ8TBQ9 72 aa-2.87□□□□□ -2.87
SCFD1-209ENST00000553280 HTN3P15516 51 aa-2.9□□□□□ -2.87
SCFD1-209ENST00000553280 GOLGB1Q14789 3259 aaKnown RBP-2.99□□□□□ -2.89
SCFD1-209ENST00000553280 SNRPGP62308 76 aaKnown RBP-3.05□□□□□ -2.9
SCFD1-209ENST00000553280 Q9Y3F1 56 aa-3.06□□□□□ -2.9
SCFD1-209ENST00000553280 RPL39P5Q59GN2 51 aa-3.09□□□□□ -2.9
SCFD1-209ENST00000553280 GCC2Q8IWJ2 1684 aa-3.11□□□□□ -2.91
SCFD1-209ENST00000553280 DEFB108AA8MXU0 73 aa-3.13□□□□□ -2.91
SCFD1-209ENST00000553280 H3BSH0 61 aa-3.17□□□□□ -2.92
SCFD1-209ENST00000553280 COX14Q96I36 57 aa-3.26□□□□□ -2.93
SCFD1-209ENST00000553280 DEFB108BQ8NET1 73 aa-3.39□□□□□ -2.95
SCFD1-209ENST00000553280 STATHP02808 62 aa-3.77□□□□□ -3.01
Retrieved 78 of 20,778 RNA–protein pairs in 33.7 ms