RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 KRTAP19-5Q3LI72 72 aa7.95□□□□□ -1.14
NEK3-202ENST00000550841 BRK1Q8WUW1 75 aa7.93□□□□□ -1.14
NEK3-202ENST00000550841 MT1EP04732 61 aa7.91□□□□□ -1.14
NEK3-202ENST00000550841 KRTAP23-1A1A580 65 aa7.87□□□□□ -1.15
NEK3-202ENST00000550841 LCE3BQ5TA77 95 aa7.87□□□□□ -1.15
NEK3-202ENST00000550841 KRTAP19-3Q7Z4W3 81 aa7.77□□□□□ -1.17
NEK3-202ENST00000550841 KRTAP12-3P60328 96 aa7.76□□□□□ -1.17
NEK3-202ENST00000550841 LCE5AQ5TCM9 118 aa7.7□□□□□ -1.18
NEK3-202ENST00000550841 PP632Q6XCG6 107 aa7.7□□□□□ -1.18
NEK3-202ENST00000550841 MT1GP13640 62 aa7.68□□□□□ -1.18
NEK3-202ENST00000550841 MT1LQ93083 61 aa7.65□□□□□ -1.18
NEK3-202ENST00000550841 PMAIP1Q13794 54 aa7.52□□□□□ -1.21
NEK3-202ENST00000550841 MT1MQ8N339 61 aa7.49□□□□□ -1.21
NEK3-202ENST00000550841 KRTAP19-4Q3LI73 84 aa7.47□□□□□ -1.21
NEK3-202ENST00000550841 KRTAP15-1Q3LI76 137 aa7.45□□□□□ -1.22
NEK3-202ENST00000550841 PRO0628Q9UI54 55 aa7.41□□□□□ -1.22
NEK3-202ENST00000550841 KRTAP4-9Q9BYQ8 210 aa7.4□□□□□ -1.22
NEK3-202ENST00000550841 DSTQ03001 7570 aaKnown RBP7.39□□□□□ -1.23
NEK3-202ENST00000550841 GPR98Q8WXG9 6306 aa7.35□□□□□ -1.23
NEK3-202ENST00000550841 KRTAP4-7Q9BYR0 210 aa7.26□□□□□ -1.25
NEK3-202ENST00000550841 KRTAP4-3Q9BYR4 195 aa7.25□□□□□ -1.25
NEK3-202ENST00000550841 LCE3CQ5T5A8 94 aa7.2□□□□□ -1.26
NEK3-202ENST00000550841 LCE1DQ5T752 114 aa7.18□□□□□ -1.26
NEK3-202ENST00000550841 LCE4AQ5TA78 99 aa7.11□□□□□ -1.27
NEK3-202ENST00000550841 MT4P47944 62 aa7.08□□□□□ -1.28
NEK3-202ENST00000550841 PRAC1Q96KF2 57 aa7.03□□□□□ -1.28
NEK3-202ENST00000550841 KTN1-AS1Q86SY8 53 aa6.95□□□□□ -1.3
NEK3-202ENST00000550841 HMCN1Q96RW7 5635 aa6.95□□□□□ -1.3
NEK3-202ENST00000550841 KRTAP5-4Q6L8H1 288 aa6.86□□□□□ -1.31
NEK3-202ENST00000550841 LOC100996750A0A140TA64 210 aa6.85□□□□□ -1.31
NEK3-202ENST00000550841 KRTAP4-6Q9BYQ5 205 aa6.82□□□□□ -1.32
NEK3-202ENST00000550841 KRTAP5-10Q6L8G5 202 aa6.81□□□□□ -1.32
NEK3-202ENST00000550841 KRTAP5-5Q701N2 237 aaPredicted RBP6.81□□□□□ -1.32
NEK3-202ENST00000550841 AHNAK2Q8IVF2 5795 aa6.81□□□□□ -1.32
NEK3-202ENST00000550841 KRTAP9-6A8MVA2 160 aa6.69□□□□□ -1.34
NEK3-202ENST00000550841 KRTAP12-4P60329 112 aa6.6□□□□□ -1.35
NEK3-202ENST00000550841 KRTAP5-7Q6L8G8 165 aa6.6□□□□□ -1.35
NEK3-202ENST00000550841 KRTAP5-3Q6L8H2 238 aa6.6□□□□□ -1.35
NEK3-202ENST00000550841 SVIPQ8NHG7 77 aa6.59□□□□□ -1.35
NEK3-202ENST00000550841 MT1AP04731 61 aa6.54□□□□□ -1.36
NEK3-202ENST00000550841 KRTAP20-2Q3LI61 65 aa6.52□□□□□ -1.37
NEK3-202ENST00000550841 SPRR5A0A1B0GTR4 108 aa6.5□□□□□ -1.37
NEK3-202ENST00000550841 KRTAP6-1Q3LI64 71 aa6.43□□□□□ -1.38
NEK3-202ENST00000550841 SYNE1Q8NF91 8797 aaKnown RBP6.41□□□□□ -1.38
NEK3-202ENST00000550841 KRTAP9-4Q9BYQ2 154 aa6.29□□□□□ -1.4
NEK3-202ENST00000550841 KRTAP5-2Q701N4 177 aa6.08□□□□□ -1.44
NEK3-202ENST00000550841 KRTAP6-2Q3LI66 62 aa6.06□□□□□ -1.44
NEK3-202ENST00000550841 KRTAP4-11Q9BYQ6 195 aa6.05□□□□□ -1.44
NEK3-202ENST00000550841 MT3P25713 68 aa6□□□□□ -1.45
NEK3-202ENST00000550841 LUZP6Q538Z0 58 aa5.99□□□□□ -1.45
NEK3-202ENST00000550841 KRTAP5-8O75690 187 aa5.83□□□□□ -1.48
NEK3-202ENST00000550841 MUC5ACP98088 5654 aa5.66□□□□□ -1.5
NEK3-202ENST00000550841 KRTAP9-9Q9BYP9 154 aa5.65□□□□□ -1.5
NEK3-202ENST00000550841 AHNAKQ09666 5890 aaKnown RBP5.65□□□□□ -1.51
NEK3-202ENST00000550841 OBSCNQ5VST9 7968 aa5.62□□□□□ -1.51
NEK3-202ENST00000550841 MUC5BQ9HC84 5762 aaPredicted RBP5.62□□□□□ -1.51
NEK3-202ENST00000550841 KRTAP5-1Q6L8H4 278 aa5.4□□□□□ -1.54
NEK3-202ENST00000550841 LCE1EQ5T753 118 aa5.38□□□□□ -1.55
NEK3-202ENST00000550841 LCE3DQ9BYE3 92 aa5.31□□□□□ -1.56
NEK3-202ENST00000550841 NDUFAF8A1L188 74 aa5.24□□□□□ -1.57
NEK3-202ENST00000550841 LCE3EQ5T5B0 92 aa5.09□□□□□ -1.59
NEK3-202ENST00000550841 LCE1BQ5T7P3 118 aa4.99□□□□□ -1.61
NEK3-202ENST00000550841 LCE1CQ5T751 118 aa4.98□□□□□ -1.61
NEK3-202ENST00000550841 KRTAP4-2Q9BYR5 136 aa4.97□□□□□ -1.61
NEK3-202ENST00000550841 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.59□□□□□ -1.67
NEK3-202ENST00000550841 KRTAP4-12Q9BQ66 201 aa4.51□□□□□ -1.69
NEK3-202ENST00000550841 A0A0A0MQY5 61 aa4.5□□□□□ -1.69
NEK3-202ENST00000550841 KRTAP5-11Q6L8G4 156 aa4.44□□□□□ -1.7
NEK3-202ENST00000550841 INE1O15225 51 aa4.38□□□□□ -1.71
NEK3-202ENST00000550841 LCE1FQ5T754 118 aa4.28□□□□□ -1.72
NEK3-202ENST00000550841 KRTAP21-2Q3LI59 83 aa4.23□□□□□ -1.73
NEK3-202ENST00000550841 PRM1P04553 51 aa4.08□□□□□ -1.76
NEK3-202ENST00000550841 PHGR1C9JFL3 82 aa4.02□□□□□ -1.77
NEK3-202ENST00000550841 KRTAP4-4Q9BYR3 166 aa3.77□□□□□ -1.81
NEK3-202ENST00000550841 H3BS24 57 aa3.58□□□□□ -1.84
NEK3-202ENST00000550841 MUC19Q7Z5P9 8384 aa3.49□□□□□ -1.85
NEK3-202ENST00000550841 KRTAP21-1Q3LI58 79 aa3.06□□□□□ -1.92
NEK3-202ENST00000550841 MUC16Q8WXI7 14507 aa2.5□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 85 ms