RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CSAG1Q6PB30 78 aa1.69□□□□□ -2.14
LIMA1-206ENST00000550611 IGFL1Q6UW32 110 aa1.69□□□□□ -2.14
LIMA1-206ENST00000550611 A0A087WSZ3 146 aa1.68□□□□□ -2.14
LIMA1-206ENST00000550611 A8MWP4 228 aa1.68□□□□□ -2.14
LIMA1-206ENST00000550611 H0Y9P7 68 aa1.68□□□□□ -2.14
LIMA1-206ENST00000550611 ADM2Q7Z4H4 148 aa1.68□□□□□ -2.14
LIMA1-206ENST00000550611 UQCR11O14957 56 aa1.67□□□□□ -2.14
LIMA1-206ENST00000550611 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.67□□□□□ -2.14
LIMA1-206ENST00000550611 DMAC1Q96GE9 116 aa1.67□□□□□ -2.14
LIMA1-206ENST00000550611 HMCN1Q96RW7 5635 aa1.66□□□□□ -2.14
LIMA1-206ENST00000550611 AHNAK2Q8IVF2 5795 aa1.66□□□□□ -2.14
LIMA1-206ENST00000550611 A0A1W2PNM2 257 aa1.66□□□□□ -2.14
LIMA1-206ENST00000550611 Q5W150 140 aa1.66□□□□□ -2.14
LIMA1-206ENST00000550611 LINC00575Q6W349 94 aa1.66□□□□□ -2.14
LIMA1-206ENST00000550611 ZCCHC13Q8WW36 166 aaKnown RBP1.66□□□□□ -2.14
LIMA1-206ENST00000550611 SMIM11BQ8TCY0 68 aa1.65□□□□□ -2.15
LIMA1-206ENST00000550611 SPINK7P58062 85 aa1.64□□□□□ -2.15
LIMA1-206ENST00000550611 KRTAP25-1Q3LHN0 102 aa1.64□□□□□ -2.15
LIMA1-206ENST00000550611 SPATA8Q6RVD6 105 aa1.64□□□□□ -2.15
LIMA1-206ENST00000550611 Q6ZQY7 126 aa1.64□□□□□ -2.15
LIMA1-206ENST00000550611 COA5Q86WW8 74 aa1.64□□□□□ -2.15
LIMA1-206ENST00000550611 IGKV4-1P06312 121 aa1.63□□□□□ -2.15
LIMA1-206ENST00000550611 SPRR2DP22532 72 aa1.63□□□□□ -2.15
LIMA1-206ENST00000550611 SPRR2FQ96RM1 72 aa1.63□□□□□ -2.15
LIMA1-206ENST00000550611 MT1BP07438 61 aa1.62□□□□□ -2.15
LIMA1-206ENST00000550611 SPINT4Q6UDR6 99 aa1.62□□□□□ -2.15
LIMA1-206ENST00000550611 SPRR5A0A1B0GTR4 108 aa1.61□□□□□ -2.15
LIMA1-206ENST00000550611 A0A1B0GU69 56 aa1.6□□□□□ -2.15
LIMA1-206ENST00000550611 P0C880 135 aa1.6□□□□□ -2.15
LIMA1-206ENST00000550611 LINC00472Q9H8W2 130 aa1.6□□□□□ -2.15
LIMA1-206ENST00000550611 KRTAP19-8Q3LI54 63 aa1.59□□□□□ -2.15
LIMA1-206ENST00000550611 KRTAP5-10Q6L8G5 202 aa1.59□□□□□ -2.15
LIMA1-206ENST00000550611 ACYP2P14621 99 aa1.57□□□□□ -2.16
LIMA1-206ENST00000550611 H1FX-AS1Q4G0G2 97 aa1.57□□□□□ -2.16
LIMA1-206ENST00000550611 SPRR2GQ9BYE4 73 aa1.57□□□□□ -2.16
LIMA1-206ENST00000550611 WFDC13Q8IUB5 93 aa1.56□□□□□ -2.16
LIMA1-206ENST00000550611 TP53AIP1Q9HCN2 124 aa1.56□□□□□ -2.16
LIMA1-206ENST00000550611 A0A1B0GU33 70 aa1.54□□□□□ -2.16
LIMA1-206ENST00000550611 K7EQZ3 153 aa1.51□□□□□ -2.17
LIMA1-206ENST00000550611 MT4P47944 62 aa1.5□□□□□ -2.17
LIMA1-206ENST00000550611 AHNAKQ09666 5890 aaKnown RBP1.5□□□□□ -2.17
LIMA1-206ENST00000550611 KRTAP8-1Q8IUC2 63 aa1.49□□□□□ -2.17
LIMA1-206ENST00000550611 MRPL34Q9BQ48 92 aaKnown RBP1.49□□□□□ -2.17
LIMA1-206ENST00000550611 CRIPTQ9P021 101 aa1.49□□□□□ -2.17
LIMA1-206ENST00000550611 MMP24-AS1A0A0U1RRL7 71 aa1.47□□□□□ -2.17
LIMA1-206ENST00000550611 MT1XP80297 61 aa1.47□□□□□ -2.17
LIMA1-206ENST00000550611 PRO2289Q9P1D8 64 aa1.47□□□□□ -2.17
LIMA1-206ENST00000550611 R4GN34 69 aa1.46□□□□□ -2.18
LIMA1-206ENST00000550611 PLAC4Q8WY50 150 aa1.45□□□□□ -2.18
LIMA1-206ENST00000550611 S4R3F8 94 aa1.45□□□□□ -2.18
LIMA1-206ENST00000550611 MUC5ACP98088 5654 aa1.41□□□□□ -2.18
LIMA1-206ENST00000550611 INE1O15225 51 aa1.41□□□□□ -2.18
LIMA1-206ENST00000550611 MUC5BQ9HC84 5762 aaPredicted RBP1.41□□□□□ -2.18
LIMA1-206ENST00000550611 H0YAA0 97 aa1.4□□□□□ -2.19
LIMA1-206ENST00000550611 KRTAP19-7Q3SYF9 63 aa1.33□□□□□ -2.2
LIMA1-206ENST00000550611 KRTAP19-3Q7Z4W3 81 aa1.33□□□□□ -2.2
LIMA1-206ENST00000550611 C10orf95Q9H7T3 257 aa1.32□□□□□ -2.2
LIMA1-206ENST00000550611 MT1EP04732 61 aa1.31□□□□□ -2.2
LIMA1-206ENST00000550611 M0QZ58 72 aa1.3□□□□□ -2.2
LIMA1-206ENST00000550611 KRTAP12-4P60329 112 aa1.29□□□□□ -2.2
LIMA1-206ENST00000550611 MT1GP13640 62 aa1.28□□□□□ -2.2
LIMA1-206ENST00000550611 KRTAP20-2Q3LI61 65 aa1.28□□□□□ -2.2
LIMA1-206ENST00000550611 A0A0D9SG42 100 aa1.26□□□□□ -2.21
LIMA1-206ENST00000550611 MT1MQ8N339 61 aa1.25□□□□□ -2.21
LIMA1-206ENST00000550611 SYNE1Q8NF91 8797 aaKnown RBP1.24□□□□□ -2.21
LIMA1-206ENST00000550611 KRTAP12-3P60328 96 aa1.24□□□□□ -2.21
LIMA1-206ENST00000550611 KRTAP19-5Q3LI72 72 aa1.23□□□□□ -2.21
LIMA1-206ENST00000550611 MT1LQ93083 61 aa1.23□□□□□ -2.21
LIMA1-206ENST00000550611 KRTAP13-4Q3LI77 160 aa1.18□□□□□ -2.22
LIMA1-206ENST00000550611 KRTAP12-1P59990 96 aa1.17□□□□□ -2.22
LIMA1-206ENST00000550611 TNP1P09430 55 aa1.15□□□□□ -2.23
LIMA1-206ENST00000550611 KRTAP6-1Q3LI64 71 aa1.05□□□□□ -2.24
LIMA1-206ENST00000550611 MT1AP04731 61 aa1.04□□□□□ -2.24
LIMA1-206ENST00000550611 KRTAP6-2Q3LI66 62 aa1.02□□□□□ -2.25
LIMA1-206ENST00000550611 PHGR1C9JFL3 82 aa0.95□□□□□ -2.26
LIMA1-206ENST00000550611 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
LIMA1-206ENST00000550611 PRM1P04553 51 aa0.77□□□□□ -2.29
LIMA1-206ENST00000550611 KRTAP21-1Q3LI58 79 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 45.9 ms