RNA–Protein interactions for RNA: ENST00000550155.5

CNOT2-222, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 2

Gene CNOT2, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-222	ENST00000550155	TNXB	P22105	4242 aa		0.3	□□□□□ -2.36
CNOT2-222	ENST00000550155	KMT2A	Q03164	3969 aa		0.3	□□□□□ -2.36
CNOT2-222	ENST00000550155	VPS13D	Q5THJ4	4388 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	LRP1	Q07954	4544 aa	Known RBP	0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	FAT3	Q8TDW7	4589 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	DNAH10	Q8IVF4	4471 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	LINC01546	A6NGU7	62 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155		H3BNG1	76 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155		K7EIM0	57 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	RPL39	P62891	51 aa	Known RBP	0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	LINC01590	Q5TEZ4	76 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	HSPG2	P98160	4391 aa		0.29	□□□□□ -2.36
CNOT2-222	ENST00000550155	NEB	P20929	6669 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	KIAA1109	Q2LD37	5005 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	DNAH5	Q8TE73	4624 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	PLEC	Q15149	4684 aa	Known RBP	0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	FAT2	Q9NYQ8	4349 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	BIRC6	Q9NR09	4857 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	DNAH2	Q9P225	4427 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	SACS	Q9NZJ4	4579 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	RNF213	Q63HN8	5207 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	IGLV5-48	A0A075B6I7	105 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	POLR2K	P53803	58 aa	Known RBP	0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155		S4R3F8	94 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	HERC1	Q15751	4861 aa		0.28	□□□□□ -2.36
CNOT2-222	ENST00000550155	MYCBP2	O75592	4640 aa		0.28	□□□□□ -2.37
CNOT2-222	ENST00000550155	DYNC1H1	Q14204	4646 aa	Known RBP	0.28	□□□□□ -2.37
CNOT2-222	ENST00000550155	PKHD1L1	Q86WI1	4243 aa		0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155	PKD1	P98161	4303 aa		0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155	DNAH8	Q96JB1	4490 aa		0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155		A8MTW9	85 aa		0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155		M0QY20	66 aa		0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155		M0QZ58	72 aa		0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155	HERC2	O95714	4834 aa		0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155	FLG	P20930	4061 aa	Predicted RBP	0.27	□□□□□ -2.37
CNOT2-222	ENST00000550155	DNAH17	Q9UFH2	4485 aa		0.26	□□□□□ -2.37
CNOT2-222	ENST00000550155	LRP1B	Q9NZR2	4599 aa		0.26	□□□□□ -2.37
CNOT2-222	ENST00000550155	HMCN2	Q8NDA2	5059 aa		0.26	□□□□□ -2.37
CNOT2-222	ENST00000550155	LINC00308	Q8TCZ7	52 aa		0.26	□□□□□ -2.37
CNOT2-222	ENST00000550155	DNAH11	Q96DT5	4516 aa		0.26	□□□□□ -2.37
CNOT2-222	ENST00000550155	APOB	P04114	4563 aa	Known RBP	0.26	□□□□□ -2.37
CNOT2-222	ENST00000550155	LPA	P08519	4548 aa		0.25	□□□□□ -2.37
CNOT2-222	ENST00000550155	RPS29	P62273	56 aa	Known RBP	0.25	□□□□□ -2.37
CNOT2-222	ENST00000550155	LRP2	P98164	4655 aa		0.25	□□□□□ -2.37
CNOT2-222	ENST00000550155	FAT1	Q14517	4588 aa		0.25	□□□□□ -2.37
CNOT2-222	ENST00000550155	MUC2	Q02817	5179 aa		0.24	□□□□□ -2.37
CNOT2-222	ENST00000550155	SSPO	A2VEC9	5147 aa		0.24	□□□□□ -2.37
CNOT2-222	ENST00000550155	USH2A	O75445	5202 aa		0.24	□□□□□ -2.37
CNOT2-222	ENST00000550155	TNP1	P09430	55 aa		0.23	□□□□□ -2.37
CNOT2-222	ENST00000550155	SPRR2E	P22531	72 aa		0.23	□□□□□ -2.37
CNOT2-222	ENST00000550155	SPRR2A	P35326	72 aa		0.23	□□□□□ -2.37
CNOT2-222	ENST00000550155	KRTAP8-1	Q8IUC2	63 aa		0.23	□□□□□ -2.37
CNOT2-222	ENST00000550155	SPRR2F	Q96RM1	72 aa		0.23	□□□□□ -2.37
CNOT2-222	ENST00000550155	MUC12	Q9UKN1	5478 aa		0.23	□□□□□ -2.37
CNOT2-222	ENST00000550155	MMP24-AS1	A0A0U1RRL7	71 aa		0.22	□□□□□ -2.37
CNOT2-222	ENST00000550155	KRTAP20-1	Q3LI63	56 aa		0.22	□□□□□ -2.37
CNOT2-222	ENST00000550155	MUC17	Q685J3	4493 aa		0.22	□□□□□ -2.37
CNOT2-222	ENST00000550155	MT1HL1	P0DM35	61 aa		0.21	□□□□□ -2.38
CNOT2-222	ENST00000550155	MT4	P47944	62 aa		0.21	□□□□□ -2.38
CNOT2-222	ENST00000550155	MT1H	P80294	61 aa		0.2	□□□□□ -2.38
CNOT2-222	ENST00000550155	MT2A	P02795	61 aa		0.18	□□□□□ -2.38
CNOT2-222	ENST00000550155	MT1F	P04733	61 aa		0.18	□□□□□ -2.38
CNOT2-222	ENST00000550155	KRTAP19-6	Q3LI70	58 aa		0.18	□□□□□ -2.38
CNOT2-222	ENST00000550155	KRTAP19-5	Q3LI72	72 aa		0.16	□□□□□ -2.38
CNOT2-222	ENST00000550155	MT1G	P13640	62 aa		0.15	□□□□□ -2.39
CNOT2-222	ENST00000550155	SPRR2G	Q9BYE4	73 aa		0.15	□□□□□ -2.39
CNOT2-222	ENST00000550155	MT1X	P80297	61 aa		0.14	□□□□□ -2.39
CNOT2-222	ENST00000550155	KRTAP19-8	Q3LI54	63 aa		0.14	□□□□□ -2.39
CNOT2-222	ENST00000550155	MT1M	Q8N339	61 aa		0.14	□□□□□ -2.39
CNOT2-222	ENST00000550155	MT1A	P04731	61 aa		0.13	□□□□□ -2.39
CNOT2-222	ENST00000550155	MT1E	P04732	61 aa		0.13	□□□□□ -2.39
CNOT2-222	ENST00000550155	MT1B	P07438	61 aa		0.13	□□□□□ -2.39
CNOT2-222	ENST00000550155	KRTAP6-2	Q3LI66	62 aa		0.13	□□□□□ -2.39
CNOT2-222	ENST00000550155	KRTAP19-7	Q3SYF9	63 aa		0.13	□□□□□ -2.39
CNOT2-222	ENST00000550155	KRTAP20-2	Q3LI61	65 aa		0.12	□□□□□ -2.39
CNOT2-222	ENST00000550155	MT1L	Q93083	61 aa		0.12	□□□□□ -2.39
CNOT2-222	ENST00000550155	KRTAP19-2	Q3LHN2	52 aa		0.11	□□□□□ -2.39
CNOT2-222	ENST00000550155	KRTAP6-1	Q3LI64	71 aa		0.1	□□□□□ -2.39

Retrieved 78 of 20,778 RNA–protein pairs in 42.7 ms