RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 KRTAP2-3P0C7H8 128 aa3.24□□□□□ -1.89
DEPDC4-208ENST00000549341 PMAIP1Q13794 54 aa3.24□□□□□ -1.89
DEPDC4-208ENST00000549341 KRTAP2-4Q9BYR9 128 aa3.24□□□□□ -1.89
DEPDC4-208ENST00000549341 A0A0D9SG42 100 aa3.23□□□□□ -1.89
DEPDC4-208ENST00000549341 A8MU10 97 aa3.21□□□□□ -1.9
DEPDC4-208ENST00000549341 KRTAP13-4Q3LI77 160 aa3.2□□□□□ -1.9
DEPDC4-208ENST00000549341 LINC01554Q52M75 96 aa3.2□□□□□ -1.9
DEPDC4-208ENST00000549341 SPINT4Q6UDR6 99 aa3.19□□□□□ -1.9
DEPDC4-208ENST00000549341 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
DEPDC4-208ENST00000549341 SPRR2EP22531 72 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2BP35325 72 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2AP35326 72 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP12-1P59990 96 aa3.14□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP4-3Q9BYR4 195 aa3.13□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP10-12P60413 245 aa3.12□□□□□ -1.91
DEPDC4-208ENST00000549341 PLAC4Q8WY50 150 aa3.12□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2GQ9BYE4 73 aa3.12□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP12-2P59991 146 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 CAMK2N1Q7Z7J9 78 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 KTN1-AS1Q86SY8 53 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2FQ96RM1 72 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 KRTAP2-1Q9BYU5 128 aa3.11□□□□□ -1.91
DEPDC4-208ENST00000549341 MT1BP07438 61 aa3.1□□□□□ -1.91
DEPDC4-208ENST00000549341 ROMO1P60602 79 aa3.1□□□□□ -1.91
DEPDC4-208ENST00000549341 SPRR2DP22532 72 aa3.05□□□□□ -1.92
DEPDC4-208ENST00000549341 KRTAP19-8Q3LI54 63 aa3.03□□□□□ -1.92
DEPDC4-208ENST00000549341 KRTAP5-2Q701N4 177 aa3.01□□□□□ -1.93
DEPDC4-208ENST00000549341 DSTQ03001 7570 aaKnown RBP2.99□□□□□ -1.93
DEPDC4-208ENST00000549341 KRTAP8-1Q8IUC2 63 aa2.98□□□□□ -1.93
DEPDC4-208ENST00000549341 PRO2289Q9P1D8 64 aa2.98□□□□□ -1.93
DEPDC4-208ENST00000549341 TNP1P09430 55 aa2.97□□□□□ -1.93
DEPDC4-208ENST00000549341 KRTAP25-1Q3LHN0 102 aa2.97□□□□□ -1.93
DEPDC4-208ENST00000549341 PRAC1Q96KF2 57 aa2.95□□□□□ -1.94
DEPDC4-208ENST00000549341 C10orf95Q9H7T3 257 aa2.94□□□□□ -1.94
DEPDC4-208ENST00000549341 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
DEPDC4-208ENST00000549341 PP632Q6XCG6 107 aa2.91□□□□□ -1.94
DEPDC4-208ENST00000549341 HMCN1Q96RW7 5635 aa2.9□□□□□ -1.95
DEPDC4-208ENST00000549341 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
DEPDC4-208ENST00000549341 MT1XP80297 61 aa2.85□□□□□ -1.95
DEPDC4-208ENST00000549341 LCE3AQ5TA76 89 aa2.84□□□□□ -1.95
DEPDC4-208ENST00000549341 LCE3CQ5T5A8 94 aa2.81□□□□□ -1.96
DEPDC4-208ENST00000549341 MT4P47944 62 aa2.71□□□□□ -1.98
DEPDC4-208ENST00000549341 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
DEPDC4-208ENST00000549341 SPRR5A0A1B0GTR4 108 aa2.66□□□□□ -1.98
DEPDC4-208ENST00000549341 KRTAP12-3P60328 96 aa2.66□□□□□ -1.98
DEPDC4-208ENST00000549341 KRTAP5-7Q6L8G8 165 aa2.63□□□□□ -1.99
DEPDC4-208ENST00000549341 KRTAP19-5Q3LI72 72 aa2.6□□□□□ -1.99
DEPDC4-208ENST00000549341 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -1.99
DEPDC4-208ENST00000549341 KRTAP19-3Q7Z4W3 81 aa2.58□□□□□ -2
DEPDC4-208ENST00000549341 KRTAP5-8O75690 187 aa2.56□□□□□ -2
DEPDC4-208ENST00000549341 LUZP6Q538Z0 58 aa2.56□□□□□ -2
DEPDC4-208ENST00000549341 AHNAKQ09666 5890 aaKnown RBP2.55□□□□□ -2
DEPDC4-208ENST00000549341 MT1EP04732 61 aa2.54□□□□□ -2
DEPDC4-208ENST00000549341 KRTAP19-7Q3SYF9 63 aa2.54□□□□□ -2
DEPDC4-208ENST00000549341 LCE3EQ5T5B0 92 aa2.54□□□□□ -2
DEPDC4-208ENST00000549341 A0A0A0MQY5 61 aa2.53□□□□□ -2
DEPDC4-208ENST00000549341 LCE1CQ5T751 118 aa2.53□□□□□ -2
DEPDC4-208ENST00000549341 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
DEPDC4-208ENST00000549341 MT1LQ93083 61 aa2.47□□□□□ -2.01
DEPDC4-208ENST00000549341 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
DEPDC4-208ENST00000549341 MT1GP13640 62 aa2.45□□□□□ -2.02
DEPDC4-208ENST00000549341 MT1MQ8N339 61 aa2.44□□□□□ -2.02
DEPDC4-208ENST00000549341 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
DEPDC4-208ENST00000549341 KRTAP20-2Q3LI61 65 aa2.4□□□□□ -2.03
DEPDC4-208ENST00000549341 NDUFAF8A1L188 74 aa2.39□□□□□ -2.03
DEPDC4-208ENST00000549341 KRTAP12-4P60329 112 aa2.29□□□□□ -2.04
DEPDC4-208ENST00000549341 SYNE1Q8NF91 8797 aaKnown RBP2.28□□□□□ -2.04
DEPDC4-208ENST00000549341 MT1AP04731 61 aa2.13□□□□□ -2.07
DEPDC4-208ENST00000549341 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
DEPDC4-208ENST00000549341 INE1O15225 51 aa2.06□□□□□ -2.08
DEPDC4-208ENST00000549341 KRTAP6-1Q3LI64 71 aa2.06□□□□□ -2.08
DEPDC4-208ENST00000549341 KRTAP6-2Q3LI66 62 aa2.01□□□□□ -2.09
DEPDC4-208ENST00000549341 LCE3DQ9BYE3 92 aa1.89□□□□□ -2.11
DEPDC4-208ENST00000549341 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
DEPDC4-208ENST00000549341 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
DEPDC4-208ENST00000549341 PRM1P04553 51 aa1.59□□□□□ -2.15
DEPDC4-208ENST00000549341 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
DEPDC4-208ENST00000549341 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 74.4 ms