RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ROMO1P60602 79 aa4.93□□□□□ -1.62
RTN3-213ENST00000543552 A0A0D9SG42 100 aa4.91□□□□□ -1.62
RTN3-213ENST00000543552 KRTAP19-7Q3SYF9 63 aa4.91□□□□□ -1.62
RTN3-213ENST00000543552 LCE5AQ5TCM9 118 aa4.91□□□□□ -1.62
RTN3-213ENST00000543552 MT1EP04732 61 aa4.9□□□□□ -1.63
RTN3-213ENST00000543552 KRTAP19-3Q7Z4W3 81 aa4.89□□□□□ -1.63
RTN3-213ENST00000543552 DSTQ03001 7570 aaKnown RBP4.89□□□□□ -1.63
RTN3-213ENST00000543552 GPR98Q8WXG9 6306 aa4.88□□□□□ -1.63
RTN3-213ENST00000543552 MIR22HGQ0VDD5 57 aa4.87□□□□□ -1.63
RTN3-213ENST00000543552 A0A1B0GU33 70 aa4.86□□□□□ -1.63
RTN3-213ENST00000543552 UQCR11O14957 56 aa4.86□□□□□ -1.63
RTN3-213ENST00000543552 SPINT4Q6UDR6 99 aa4.86□□□□□ -1.63
RTN3-213ENST00000543552 KRTAP25-1Q3LHN0 102 aa4.84□□□□□ -1.63
RTN3-213ENST00000543552 A0A1B0GU69 56 aa4.83□□□□□ -1.64
RTN3-213ENST00000543552 KRTAP12-1P59990 96 aa4.79□□□□□ -1.64
RTN3-213ENST00000543552 PP632Q6XCG6 107 aa4.79□□□□□ -1.64
RTN3-213ENST00000543552 MT1GP13640 62 aa4.78□□□□□ -1.64
RTN3-213ENST00000543552 KRTAP19-5Q3LI72 72 aa4.77□□□□□ -1.65
RTN3-213ENST00000543552 KRTAP4-9Q9BYQ8 210 aa4.76□□□□□ -1.65
RTN3-213ENST00000543552 KRTAP4-7Q9BYR0 210 aa4.74□□□□□ -1.65
RTN3-213ENST00000543552 HMCN1Q96RW7 5635 aa4.68□□□□□ -1.66
RTN3-213ENST00000543552 MT1MQ8N339 61 aa4.67□□□□□ -1.66
RTN3-213ENST00000543552 TNP1P09430 55 aa4.66□□□□□ -1.66
RTN3-213ENST00000543552 LCE1DQ5T752 114 aa4.66□□□□□ -1.66
RTN3-213ENST00000543552 LCE4AQ5TA78 99 aa4.66□□□□□ -1.66
RTN3-213ENST00000543552 MT1LQ93083 61 aa4.65□□□□□ -1.67
RTN3-213ENST00000543552 LCE3AQ5TA76 89 aa4.61□□□□□ -1.67
RTN3-213ENST00000543552 C10orf95Q9H7T3 257 aa4.61□□□□□ -1.67
RTN3-213ENST00000543552 MT4P47944 62 aa4.6□□□□□ -1.67
RTN3-213ENST00000543552 K7ERS5 55 aa4.59□□□□□ -1.67
RTN3-213ENST00000543552 KRTAP4-2Q9BYR5 136 aa4.56□□□□□ -1.68
RTN3-213ENST00000543552 NDUFAF8A1L188 74 aa4.55□□□□□ -1.68
RTN3-213ENST00000543552 AHNAK2Q8IVF2 5795 aa4.54□□□□□ -1.68
RTN3-213ENST00000543552 KRTAP15-1Q3LI76 137 aa4.53□□□□□ -1.68
RTN3-213ENST00000543552 LUZP6Q538Z0 58 aa4.52□□□□□ -1.69
RTN3-213ENST00000543552 KRTAP5-4Q6L8H1 288 aa4.52□□□□□ -1.69
RTN3-213ENST00000543552 KRTAP4-3Q9BYR4 195 aa4.51□□□□□ -1.69
RTN3-213ENST00000543552 KRTAP12-3P60328 96 aa4.46□□□□□ -1.7
RTN3-213ENST00000543552 KRTAP5-10Q6L8G5 202 aa4.39□□□□□ -1.71
RTN3-213ENST00000543552 KRTAP4-11Q9BYQ6 195 aa4.36□□□□□ -1.71
RTN3-213ENST00000543552 SPRR5A0A1B0GTR4 108 aa4.28□□□□□ -1.72
RTN3-213ENST00000543552 KRTAP20-2Q3LI61 65 aa4.28□□□□□ -1.72
RTN3-213ENST00000543552 KRTAP5-5Q701N2 237 aaPredicted RBP4.28□□□□□ -1.72
RTN3-213ENST00000543552 KRTAP12-4P60329 112 aa4.27□□□□□ -1.73
RTN3-213ENST00000543552 KRTAP19-4Q3LI73 84 aa4.27□□□□□ -1.73
RTN3-213ENST00000543552 KRTAP5-3Q6L8H2 238 aa4.27□□□□□ -1.73
RTN3-213ENST00000543552 KRTAP5-7Q6L8G8 165 aa4.25□□□□□ -1.73
RTN3-213ENST00000543552 KRTAP23-1A1A580 65 aa4.17□□□□□ -1.74
RTN3-213ENST00000543552 SYNE1Q8NF91 8797 aaKnown RBP4.1□□□□□ -1.75
RTN3-213ENST00000543552 LCE3CQ5T5A8 94 aa4.09□□□□□ -1.75
RTN3-213ENST00000543552 MT1AP04731 61 aa3.97□□□□□ -1.77
RTN3-213ENST00000543552 KRTAP5-2Q701N4 177 aa3.94□□□□□ -1.78
RTN3-213ENST00000543552 KRTAP6-1Q3LI64 71 aa3.92□□□□□ -1.78
RTN3-213ENST00000543552 INE1O15225 51 aa3.87□□□□□ -1.79
RTN3-213ENST00000543552 AHNAKQ09666 5890 aaKnown RBP3.8□□□□□ -1.8
RTN3-213ENST00000543552 KRTAP9-6A8MVA2 160 aa3.79□□□□□ -1.8
RTN3-213ENST00000543552 KRTAP5-8O75690 187 aa3.79□□□□□ -1.8
RTN3-213ENST00000543552 KRTAP6-2Q3LI66 62 aa3.79□□□□□ -1.8
RTN3-213ENST00000543552 MUC5BQ9HC84 5762 aaPredicted RBP3.78□□□□□ -1.8
RTN3-213ENST00000543552 MUC5ACP98088 5654 aa3.77□□□□□ -1.81
RTN3-213ENST00000543552 OBSCNQ5VST9 7968 aa3.73□□□□□ -1.81
RTN3-213ENST00000543552 MT3P25713 68 aa3.67□□□□□ -1.82
RTN3-213ENST00000543552 KRTAP5-1Q6L8H4 278 aa3.54□□□□□ -1.84
RTN3-213ENST00000543552 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
RTN3-213ENST00000543552 LCE1BQ5T7P3 118 aa3.18□□□□□ -1.9
RTN3-213ENST00000543552 LCE1CQ5T751 118 aa3.14□□□□□ -1.91
RTN3-213ENST00000543552 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.13□□□□□ -1.91
RTN3-213ENST00000543552 KRTAP5-11Q6L8G4 156 aa2.97□□□□□ -1.93
RTN3-213ENST00000543552 LCE3DQ9BYE3 92 aa2.94□□□□□ -1.94
RTN3-213ENST00000543552 LCE1FQ5T754 118 aa2.83□□□□□ -1.96
RTN3-213ENST00000543552 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
RTN3-213ENST00000543552 KRTAP4-4Q9BYR3 166 aa2.63□□□□□ -1.99
RTN3-213ENST00000543552 PHGR1C9JFL3 82 aa2.58□□□□□ -2
RTN3-213ENST00000543552 KRTAP21-2Q3LI59 83 aa2.58□□□□□ -2
RTN3-213ENST00000543552 PRM1P04553 51 aa2.37□□□□□ -2.03
RTN3-213ENST00000543552 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
RTN3-213ENST00000543552 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
RTN3-213ENST00000543552 MUC16Q8WXI7 14507 aa1.6□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 126.7 ms