RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 PRO2289Q9P1D8 64 aa3.2□□□□□ -1.9
CHMP4A-209ENST00000542700 A0A0D9SG42 100 aa3.19□□□□□ -1.9
CHMP4A-209ENST00000542700 KRTAP13-4Q3LI77 160 aa3.19□□□□□ -1.9
CHMP4A-209ENST00000542700 AHNAKQ09666 5890 aaKnown RBP3.19□□□□□ -1.9
CHMP4A-209ENST00000542700 A8MU10 97 aa3.17□□□□□ -1.9
CHMP4A-209ENST00000542700 MT1XP80297 61 aa3.17□□□□□ -1.9
CHMP4A-209ENST00000542700 SPINT4Q6UDR6 99 aa3.15□□□□□ -1.91
CHMP4A-209ENST00000542700 BRK1Q8WUW1 75 aa3.15□□□□□ -1.91
CHMP4A-209ENST00000542700 CDC42SE1Q9NRR8 79 aa3.14□□□□□ -1.91
CHMP4A-209ENST00000542700 K7ERS5 55 aa3.11□□□□□ -1.91
CHMP4A-209ENST00000542700 PLAC4Q8WY50 150 aa3.11□□□□□ -1.91
CHMP4A-209ENST00000542700 MUC5BQ9HC84 5762 aaPredicted RBP3.1□□□□□ -1.91
CHMP4A-209ENST00000542700 MUC5ACP98088 5654 aa3.09□□□□□ -1.91
CHMP4A-209ENST00000542700 KRTAP23-1A1A580 65 aa3.08□□□□□ -1.92
CHMP4A-209ENST00000542700 KRTAP12-1P59990 96 aa3.08□□□□□ -1.92
CHMP4A-209ENST00000542700 LCE5AQ5TCM9 118 aa3.07□□□□□ -1.92
CHMP4A-209ENST00000542700 KRTAP9-9Q9BYP9 154 aa3.06□□□□□ -1.92
CHMP4A-209ENST00000542700 KRTAP9-4Q9BYQ2 154 aa3.06□□□□□ -1.92
CHMP4A-209ENST00000542700 CAMK2N1Q7Z7J9 78 aa3.05□□□□□ -1.92
CHMP4A-209ENST00000542700 KRTAP10-7P60409 375 aaPredicted RBP3.03□□□□□ -1.92
CHMP4A-209ENST00000542700 KRTAP5-4Q6L8H1 288 aa3.03□□□□□ -1.92
CHMP4A-209ENST00000542700 PRO0628Q9UI54 55 aa3.01□□□□□ -1.93
CHMP4A-209ENST00000542700 PMAIP1Q13794 54 aa2.99□□□□□ -1.93
CHMP4A-209ENST00000542700 KRTAP10-12P60413 245 aa2.98□□□□□ -1.93
CHMP4A-209ENST00000542700 KRTAP19-3Q7Z4W3 81 aa2.97□□□□□ -1.93
CHMP4A-209ENST00000542700 KRTAP4-7Q9BYR0 210 aa2.96□□□□□ -1.94
CHMP4A-209ENST00000542700 ROMO1P60602 79 aa2.94□□□□□ -1.94
CHMP4A-209ENST00000542700 KRTAP20-2Q3LI61 65 aa2.93□□□□□ -1.94
CHMP4A-209ENST00000542700 C10orf95Q9H7T3 257 aa2.93□□□□□ -1.94
CHMP4A-209ENST00000542700 TNP1P09430 55 aa2.88□□□□□ -1.95
CHMP4A-209ENST00000542700 MT1EP04732 61 aa2.86□□□□□ -1.95
CHMP4A-209ENST00000542700 KRTAP5-8O75690 187 aa2.84□□□□□ -1.95
CHMP4A-209ENST00000542700 KRTAP25-1Q3LHN0 102 aa2.84□□□□□ -1.95
CHMP4A-209ENST00000542700 KRTAP19-7Q3SYF9 63 aa2.84□□□□□ -1.95
CHMP4A-209ENST00000542700 KRTAP4-11Q9BYQ6 195 aa2.84□□□□□ -1.95
CHMP4A-209ENST00000542700 MT1GP13640 62 aa2.8□□□□□ -1.96
CHMP4A-209ENST00000542700 PP632Q6XCG6 107 aa2.8□□□□□ -1.96
CHMP4A-209ENST00000542700 KRTAP15-1Q3LI76 137 aa2.79□□□□□ -1.96
CHMP4A-209ENST00000542700 KTN1-AS1Q86SY8 53 aa2.79□□□□□ -1.96
CHMP4A-209ENST00000542700 PRAC1Q96KF2 57 aa2.79□□□□□ -1.96
CHMP4A-209ENST00000542700 MT1MQ8N339 61 aa2.78□□□□□ -1.96
CHMP4A-209ENST00000542700 KRTAP4-3Q9BYR4 195 aa2.78□□□□□ -1.96
CHMP4A-209ENST00000542700 KRTAP4-2Q9BYR5 136 aa2.77□□□□□ -1.97
CHMP4A-209ENST00000542700 LCE3AQ5TA76 89 aa2.74□□□□□ -1.97
CHMP4A-209ENST00000542700 KRTAP12-4P60329 112 aa2.7□□□□□ -1.98
CHMP4A-209ENST00000542700 A0A0A0MQY5 61 aa2.66□□□□□ -1.98
CHMP4A-209ENST00000542700 KRTAP19-5Q3LI72 72 aa2.65□□□□□ -1.99
CHMP4A-209ENST00000542700 KRTAP5-2Q701N4 177 aa2.65□□□□□ -1.99
CHMP4A-209ENST00000542700 SYNE1Q8NF91 8797 aaKnown RBP2.65□□□□□ -1.99
CHMP4A-209ENST00000542700 KRTAP12-3P60328 96 aa2.63□□□□□ -1.99
CHMP4A-209ENST00000542700 MT1LQ93083 61 aa2.61□□□□□ -1.99
CHMP4A-209ENST00000542700 OBSCNQ5VST9 7968 aa2.61□□□□□ -1.99
CHMP4A-209ENST00000542700 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -1.99
CHMP4A-209ENST00000542700 LCE3CQ5T5A8 94 aa2.46□□□□□ -2.02
CHMP4A-209ENST00000542700 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
CHMP4A-209ENST00000542700 LUZP6Q538Z0 58 aa2.32□□□□□ -2.04
CHMP4A-209ENST00000542700 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
CHMP4A-209ENST00000542700 KRTAP9-6A8MVA2 160 aa2.27□□□□□ -2.05
CHMP4A-209ENST00000542700 KRTAP6-1Q3LI64 71 aa2.25□□□□□ -2.05
CHMP4A-209ENST00000542700 MT1AP04731 61 aa2.21□□□□□ -2.06
CHMP4A-209ENST00000542700 MT3P25713 68 aa2.2□□□□□ -2.06
CHMP4A-209ENST00000542700 NDUFAF8A1L188 74 aa2.19□□□□□ -2.06
CHMP4A-209ENST00000542700 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
CHMP4A-209ENST00000542700 LCE1BQ5T7P3 118 aa2.03□□□□□ -2.08
CHMP4A-209ENST00000542700 LCE1EQ5T753 118 aa2.01□□□□□ -2.09
CHMP4A-209ENST00000542700 LCE1FQ5T754 118 aa1.97□□□□□ -2.09
CHMP4A-209ENST00000542700 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
CHMP4A-209ENST00000542700 LCE1CQ5T751 118 aa1.88□□□□□ -2.11
CHMP4A-209ENST00000542700 LCE3DQ9BYE3 92 aa1.85□□□□□ -2.11
CHMP4A-209ENST00000542700 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.83□□□□□ -2.12
CHMP4A-209ENST00000542700 INE1O15225 51 aa1.8□□□□□ -2.12
CHMP4A-209ENST00000542700 LCE3EQ5T5B0 92 aa1.8□□□□□ -2.12
CHMP4A-209ENST00000542700 MUC19Q7Z5P9 8384 aa1.64□□□□□ -2.15
CHMP4A-209ENST00000542700 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
CHMP4A-209ENST00000542700 KRTAP4-4Q9BYR3 166 aa1.55□□□□□ -2.16
CHMP4A-209ENST00000542700 PRM1P04553 51 aa1.53□□□□□ -2.16
CHMP4A-209ENST00000542700 KRTAP21-2Q3LI59 83 aa1.47□□□□□ -2.17
CHMP4A-209ENST00000542700 MUC16Q8WXI7 14507 aa1.11□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 100.5 ms