RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 DSTQ03001 7570 aaKnown RBP5.36□□□□□ -1.55
SNHG1-213ENST00000540725 GPR98Q8WXG9 6306 aa5.35□□□□□ -1.55
SNHG1-213ENST00000540725 KRTAP13-4Q3LI77 160 aa5.35□□□□□ -1.55
SNHG1-213ENST00000540725 CAMK2N1Q7Z7J9 78 aa5.34□□□□□ -1.55
SNHG1-213ENST00000540725 KRTAP19-7Q3SYF9 63 aa5.31□□□□□ -1.56
SNHG1-213ENST00000540725 LCE5AQ5TCM9 118 aa5.31□□□□□ -1.56
SNHG1-213ENST00000540725 MT1EP04732 61 aa5.29□□□□□ -1.56
SNHG1-213ENST00000540725 KRTAP19-3Q7Z4W3 81 aa5.28□□□□□ -1.56
SNHG1-213ENST00000540725 KRTAP4-9Q9BYQ8 210 aa5.28□□□□□ -1.56
SNHG1-213ENST00000540725 KRTAP4-2Q9BYR5 136 aa5.2□□□□□ -1.58
SNHG1-213ENST00000540725 K7ERS5 55 aa5.18□□□□□ -1.58
SNHG1-213ENST00000540725 A0A0D9SG42 100 aa5.16□□□□□ -1.58
SNHG1-213ENST00000540725 MT1GP13640 62 aa5.13□□□□□ -1.59
SNHG1-213ENST00000540725 KRTAP19-5Q3LI72 72 aa5.13□□□□□ -1.59
SNHG1-213ENST00000540725 SPINT4Q6UDR6 99 aa5.1□□□□□ -1.59
SNHG1-213ENST00000540725 PP632Q6XCG6 107 aa5.09□□□□□ -1.59
SNHG1-213ENST00000540725 HMCN1Q96RW7 5635 aa5.09□□□□□ -1.59
SNHG1-213ENST00000540725 KRTAP4-11Q9BYQ6 195 aa5.05□□□□□ -1.6
SNHG1-213ENST00000540725 KRTAP12-1P59990 96 aa5.04□□□□□ -1.6
SNHG1-213ENST00000540725 LCE4AQ5TA78 99 aa5.04□□□□□ -1.6
SNHG1-213ENST00000540725 MT1MQ8N339 61 aa5.04□□□□□ -1.6
SNHG1-213ENST00000540725 PRAC1Q96KF2 57 aa5.04□□□□□ -1.6
SNHG1-213ENST00000540725 MT4P47944 62 aa5.04□□□□□ -1.6
SNHG1-213ENST00000540725 MT1LQ93083 61 aa5.02□□□□□ -1.61
SNHG1-213ENST00000540725 ROMO1P60602 79 aa5.01□□□□□ -1.61
SNHG1-213ENST00000540725 AHNAK2Q8IVF2 5795 aa5□□□□□ -1.61
SNHG1-213ENST00000540725 KRTAP25-1Q3LHN0 102 aa4.96□□□□□ -1.62
SNHG1-213ENST00000540725 KRTAP4-3Q9BYR4 195 aa4.93□□□□□ -1.62
SNHG1-213ENST00000540725 KRTAP5-4Q6L8H1 288 aa4.92□□□□□ -1.62
SNHG1-213ENST00000540725 C10orf95Q9H7T3 257 aa4.92□□□□□ -1.62
SNHG1-213ENST00000540725 LCE3AQ5TA76 89 aa4.91□□□□□ -1.62
SNHG1-213ENST00000540725 TNP1P09430 55 aa4.87□□□□□ -1.63
SNHG1-213ENST00000540725 KRTAP5-10Q6L8G5 202 aa4.85□□□□□ -1.63
SNHG1-213ENST00000540725 H3BS24 57 aa4.82□□□□□ -1.64
SNHG1-213ENST00000540725 KRTAP5-3Q6L8H2 238 aa4.79□□□□□ -1.64
SNHG1-213ENST00000540725 KRTAP12-3P60328 96 aa4.72□□□□□ -1.65
SNHG1-213ENST00000540725 KRTAP19-4Q3LI73 84 aa4.72□□□□□ -1.65
SNHG1-213ENST00000540725 KRTAP5-7Q6L8G8 165 aa4.69□□□□□ -1.66
SNHG1-213ENST00000540725 KRTAP20-2Q3LI61 65 aa4.66□□□□□ -1.66
SNHG1-213ENST00000540725 KRTAP5-5Q701N2 237 aaPredicted RBP4.64□□□□□ -1.67
SNHG1-213ENST00000540725 SPRR5A0A1B0GTR4 108 aa4.61□□□□□ -1.67
SNHG1-213ENST00000540725 KRTAP23-1A1A580 65 aa4.58□□□□□ -1.68
SNHG1-213ENST00000540725 KRTAP12-4P60329 112 aa4.57□□□□□ -1.68
SNHG1-213ENST00000540725 SYNE1Q8NF91 8797 aaKnown RBP4.54□□□□□ -1.68
SNHG1-213ENST00000540725 KRTAP15-1Q3LI76 137 aa4.47□□□□□ -1.69
SNHG1-213ENST00000540725 LCE3CQ5T5A8 94 aa4.32□□□□□ -1.72
SNHG1-213ENST00000540725 KRTAP5-2Q701N4 177 aa4.28□□□□□ -1.72
SNHG1-213ENST00000540725 MT1AP04731 61 aa4.27□□□□□ -1.73
SNHG1-213ENST00000540725 KRTAP6-1Q3LI64 71 aa4.26□□□□□ -1.73
SNHG1-213ENST00000540725 NDUFAF8A1L188 74 aa4.18□□□□□ -1.74
SNHG1-213ENST00000540725 AHNAKQ09666 5890 aaKnown RBP4.18□□□□□ -1.74
SNHG1-213ENST00000540725 KRTAP5-8O75690 187 aa4.16□□□□□ -1.74
SNHG1-213ENST00000540725 MUC5BQ9HC84 5762 aaPredicted RBP4.15□□□□□ -1.75
SNHG1-213ENST00000540725 LUZP6Q538Z0 58 aa4.14□□□□□ -1.75
SNHG1-213ENST00000540725 MUC5ACP98088 5654 aa4.14□□□□□ -1.75
SNHG1-213ENST00000540725 OBSCNQ5VST9 7968 aa4.12□□□□□ -1.75
SNHG1-213ENST00000540725 KRTAP9-6A8MVA2 160 aa4.1□□□□□ -1.75
SNHG1-213ENST00000540725 KRTAP6-2Q3LI66 62 aa4.1□□□□□ -1.75
SNHG1-213ENST00000540725 MT3P25713 68 aa3.9□□□□□ -1.78
SNHG1-213ENST00000540725 KRTAP5-1Q6L8H4 278 aa3.87□□□□□ -1.79
SNHG1-213ENST00000540725 A0A0A0MQY5 61 aa3.81□□□□□ -1.8
SNHG1-213ENST00000540725 LCE1EQ5T753 118 aa3.63□□□□□ -1.83
SNHG1-213ENST00000540725 INE1O15225 51 aa3.58□□□□□ -1.84
SNHG1-213ENST00000540725 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.53□□□□□ -1.84
SNHG1-213ENST00000540725 LCE1BQ5T7P3 118 aa3.45□□□□□ -1.86
SNHG1-213ENST00000540725 KRTAP5-11Q6L8G4 156 aa3.41□□□□□ -1.86
SNHG1-213ENST00000540725 LCE1CQ5T751 118 aa3.37□□□□□ -1.87
SNHG1-213ENST00000540725 LCE3DQ9BYE3 92 aa3.07□□□□□ -1.92
SNHG1-213ENST00000540725 LCE1FQ5T754 118 aa3.03□□□□□ -1.92
SNHG1-213ENST00000540725 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
SNHG1-213ENST00000540725 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
SNHG1-213ENST00000540725 PHGR1C9JFL3 82 aa2.84□□□□□ -1.96
SNHG1-213ENST00000540725 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
SNHG1-213ENST00000540725 PRM1P04553 51 aa2.6□□□□□ -1.99
SNHG1-213ENST00000540725 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
SNHG1-213ENST00000540725 KRTAP21-1Q3LI58 79 aa2.15□□□□□ -2.07
SNHG1-213ENST00000540725 MUC16Q8WXI7 14507 aa1.78□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 53.4 ms