RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	SPRR2E	P22531	72 aa		4.89	□□□□□ -1.63
CTNND1-238	ENST00000534647	SPRR2B	P35325	72 aa		4.89	□□□□□ -1.63
CTNND1-238	ENST00000534647	SPRR2A	P35326	72 aa		4.89	□□□□□ -1.63
CTNND1-238	ENST00000534647	PRO2289	Q9P1D8	64 aa		4.88	□□□□□ -1.63
CTNND1-238	ENST00000534647		A0A0D9SG42	100 aa		4.87	□□□□□ -1.63
CTNND1-238	ENST00000534647	KRTAP13-4	Q3LI77	160 aa		4.87	□□□□□ -1.63
CTNND1-238	ENST00000534647	KRTAP2-2	Q9BYT5	123 aa		4.86	□□□□□ -1.63
CTNND1-238	ENST00000534647	KRTAP2-1	Q9BYU5	128 aa		4.86	□□□□□ -1.63
CTNND1-238	ENST00000534647	LCE1F	Q5T754	118 aa		4.85	□□□□□ -1.63
CTNND1-238	ENST00000534647	MT1X	P80297	61 aa		4.84	□□□□□ -1.63
CTNND1-238	ENST00000534647	KRTAP8-1	Q8IUC2	63 aa		4.82	□□□□□ -1.64
CTNND1-238	ENST00000534647	KRTAP12-2	P59991	146 aa		4.81	□□□□□ -1.64
CTNND1-238	ENST00000534647	LCE1D	Q5T752	114 aa		4.81	□□□□□ -1.64
CTNND1-238	ENST00000534647	PLAC4	Q8WY50	150 aa		4.78	□□□□□ -1.64
CTNND1-238	ENST00000534647	SPRR2D	P22532	72 aa		4.74	□□□□□ -1.65
CTNND1-238	ENST00000534647	KRTAP12-1	P59990	96 aa		4.73	□□□□□ -1.65
CTNND1-238	ENST00000534647	KRTAP4-8	A0A0G2JLE6	195 aa		4.7	□□□□□ -1.66
CTNND1-238	ENST00000534647	ROMO1	P60602	79 aa		4.63	□□□□□ -1.67
CTNND1-238	ENST00000534647	KRTAP10-12	P60413	245 aa		4.62	□□□□□ -1.67
CTNND1-238	ENST00000534647	KRTAP10-7	P60409	375 aa	Predicted RBP	4.6	□□□□□ -1.67
CTNND1-238	ENST00000534647	KRTAP4-9	Q9BYQ8	210 aa		4.55	□□□□□ -1.68
CTNND1-238	ENST00000534647	KRTAP4-11	Q9BYQ6	195 aa		4.54	□□□□□ -1.68
CTNND1-238	ENST00000534647	C10orf95	Q9H7T3	257 aa		4.46	□□□□□ -1.7
CTNND1-238	ENST00000534647	LCE3C	Q5T5A8	94 aa		4.45	□□□□□ -1.7
CTNND1-238	ENST00000534647	KRTAP4-7	Q9BYR0	210 aa		4.41	□□□□□ -1.7
CTNND1-238	ENST00000534647	TNP1	P09430	55 aa		4.39	□□□□□ -1.71
CTNND1-238	ENST00000534647	KRTAP19-7	Q3SYF9	63 aa		4.34	□□□□□ -1.71
CTNND1-238	ENST00000534647	GPR98	Q8WXG9	6306 aa		4.33	□□□□□ -1.72
CTNND1-238	ENST00000534647	DST	Q03001	7570 aa	Known RBP	4.33	□□□□□ -1.72
CTNND1-238	ENST00000534647	KRTAP19-3	Q7Z4W3	81 aa		4.33	□□□□□ -1.72
CTNND1-238	ENST00000534647	MT1E	P04732	61 aa		4.31	□□□□□ -1.72
CTNND1-238	ENST00000534647	PP632	Q6XCG6	107 aa		4.29	□□□□□ -1.72
CTNND1-238	ENST00000534647	MT1G	P13640	62 aa		4.23	□□□□□ -1.73
CTNND1-238	ENST00000534647	KRTAP4-2	Q9BYR5	136 aa		4.19	□□□□□ -1.74
CTNND1-238	ENST00000534647	SPRR5	A0A1B0GTR4	108 aa		4.17	□□□□□ -1.74
CTNND1-238	ENST00000534647	MT4	P47944	62 aa		4.14	□□□□□ -1.75
CTNND1-238	ENST00000534647	KRTAP19-5	Q3LI72	72 aa		4.14	□□□□□ -1.75
CTNND1-238	ENST00000534647	LCE3A	Q5TA76	89 aa		4.14	□□□□□ -1.75
CTNND1-238	ENST00000534647	KRTAP5-4	Q6L8H1	288 aa		4.12	□□□□□ -1.75
CTNND1-238	ENST00000534647	MT1M	Q8N339	61 aa		4.11	□□□□□ -1.75
CTNND1-238	ENST00000534647	KRTAP5-10	Q6L8G5	202 aa		4.1	□□□□□ -1.75
CTNND1-238	ENST00000534647	HMCN1	Q96RW7	5635 aa		4.1	□□□□□ -1.75
CTNND1-238	ENST00000534647	MT1L	Q93083	61 aa		4.08	□□□□□ -1.76
CTNND1-238	ENST00000534647	LCE3E	Q5T5B0	92 aa		4.06	□□□□□ -1.76
CTNND1-238	ENST00000534647	KRTAP12-3	P60328	96 aa		3.99	□□□□□ -1.77
CTNND1-238	ENST00000534647	KRTAP5-7	Q6L8G8	165 aa		3.99	□□□□□ -1.77
CTNND1-238	ENST00000534647	KRTAP4-3	Q9BYR4	195 aa		3.99	□□□□□ -1.77
CTNND1-238	ENST00000534647	AHNAK2	Q8IVF2	5795 aa		3.96	□□□□□ -1.78
CTNND1-238	ENST00000534647	KRTAP5-3	Q6L8H2	238 aa		3.94	□□□□□ -1.78
CTNND1-238	ENST00000534647	INE1	O15225	51 aa		3.93	□□□□□ -1.78
CTNND1-238	ENST00000534647	KRTAP20-2	Q3LI61	65 aa		3.86	□□□□□ -1.79
CTNND1-238	ENST00000534647	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.83	□□□□□ -1.8
CTNND1-238	ENST00000534647	KRTAP12-4	P60329	112 aa		3.78	□□□□□ -1.8
CTNND1-238	ENST00000534647	LCE1E	Q5T753	118 aa		3.73	□□□□□ -1.81
CTNND1-238	ENST00000534647	LCE3D	Q9BYE3	92 aa		3.63	□□□□□ -1.83
CTNND1-238	ENST00000534647	KRTAP5-2	Q701N4	177 aa		3.56	□□□□□ -1.84
CTNND1-238	ENST00000534647	SYNE1	Q8NF91	8797 aa	Known RBP	3.55	□□□□□ -1.84
CTNND1-238	ENST00000534647	KRTAP5-8	O75690	187 aa		3.49	□□□□□ -1.85
CTNND1-238	ENST00000534647	MT1A	P04731	61 aa		3.47	□□□□□ -1.85
CTNND1-238	ENST00000534647	KRTAP9-6	A8MVA2	160 aa		3.45	□□□□□ -1.86
CTNND1-238	ENST00000534647	KRTAP6-1	Q3LI64	71 aa		3.45	□□□□□ -1.86
CTNND1-238	ENST00000534647	MUC5AC	P98088	5654 aa		3.39	□□□□□ -1.87
CTNND1-238	ENST00000534647	KRTAP6-2	Q3LI66	62 aa		3.34	□□□□□ -1.87
CTNND1-238	ENST00000534647	AHNAK	Q09666	5890 aa	Known RBP	3.34	□□□□□ -1.88
CTNND1-238	ENST00000534647	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.32	□□□□□ -1.88
CTNND1-238	ENST00000534647	OBSCN	Q5VST9	7968 aa		3.26	□□□□□ -1.89
CTNND1-238	ENST00000534647	KRTAP5-1	Q6L8H4	278 aa		3.23	□□□□□ -1.89
CTNND1-238	ENST00000534647	KRTAP5-11	Q6L8G4	156 aa		3.06	□□□□□ -1.92
CTNND1-238	ENST00000534647	LCE1C	Q5T751	118 aa		2.81	□□□□□ -1.96
CTNND1-238	ENST00000534647	LCE1B	Q5T7P3	118 aa		2.81	□□□□□ -1.96
CTNND1-238	ENST00000534647	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.54	□□□□□ -2
CTNND1-238	ENST00000534647	PRM1	P04553	51 aa		2.4	□□□□□ -2.03
CTNND1-238	ENST00000534647	PHGR1	C9JFL3	82 aa		2.37	□□□□□ -2.03
CTNND1-238	ENST00000534647	KRTAP21-2	Q3LI59	83 aa		2.3	□□□□□ -2.04
CTNND1-238	ENST00000534647	KRTAP4-4	Q9BYR3	166 aa		2.08	□□□□□ -2.08
CTNND1-238	ENST00000534647	MUC19	Q7Z5P9	8384 aa		1.99	□□□□□ -2.09
CTNND1-238	ENST00000534647	KRTAP21-1	Q3LI58	79 aa		1.83	□□□□□ -2.12
CTNND1-238	ENST00000534647	MUC16	Q8WXI7	14507 aa		1.41	□□□□□ -2.18

Retrieved 78 of 20,778 RNA–protein pairs in 61.6 ms