RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 KRTAP13-4Q3LI77 160 aa1.55□□□□□ -2.16
CSMD3-210ENST00000534172 TNXBP22105 4242 aa1.54□□□□□ -2.16
CSMD3-210ENST00000534172 A0A096LNI7 61 aa1.54□□□□□ -2.16
CSMD3-210ENST00000534172 APLNQ9ULZ1 77 aa1.54□□□□□ -2.16
CSMD3-210ENST00000534172 H3BNG1 76 aa1.53□□□□□ -2.16
CSMD3-210ENST00000534172 USH2AO75445 5202 aa1.53□□□□□ -2.16
CSMD3-210ENST00000534172 LINC01556Q5JQF7 62 aa1.52□□□□□ -2.17
CSMD3-210ENST00000534172 LRP1Q07954 4544 aaKnown RBP1.52□□□□□ -2.17
CSMD3-210ENST00000534172 KRTAP13-1Q8IUC0 172 aa1.51□□□□□ -2.17
CSMD3-210ENST00000534172 FSIP2Q5CZC0 6907 aa1.51□□□□□ -2.17
CSMD3-210ENST00000534172 A0A0D9SG42 100 aa1.51□□□□□ -2.17
CSMD3-210ENST00000534172 SPINK6Q6UWN8 80 aa1.51□□□□□ -2.17
CSMD3-210ENST00000534172 SPART-AS1P0CW21 52 aa1.5□□□□□ -2.17
CSMD3-210ENST00000534172 KRTAP12-1P59990 96 aa1.48□□□□□ -2.17
CSMD3-210ENST00000534172 MT1HL1P0DM35 61 aa1.47□□□□□ -2.17
CSMD3-210ENST00000534172 KRTAP2-1Q9BYU5 128 aa1.47□□□□□ -2.17
CSMD3-210ENST00000534172 HTN3P15516 51 aa1.46□□□□□ -2.18
CSMD3-210ENST00000534172 FCGBPQ9Y6R7 5405 aaPredicted RBP1.46□□□□□ -2.18
CSMD3-210ENST00000534172 KRTAP5-7Q6L8G8 165 aa1.45□□□□□ -2.18
CSMD3-210ENST00000534172 M0QZ58 72 aa1.44□□□□□ -2.18
CSMD3-210ENST00000534172 DEFB135Q30KP9 77 aa1.43□□□□□ -2.18
CSMD3-210ENST00000534172 DEFB4AO15263 64 aa1.42□□□□□ -2.18
CSMD3-210ENST00000534172 KRTAP12-3P60328 96 aa1.42□□□□□ -2.18
CSMD3-210ENST00000534172 SYNE2Q8WXH0 6885 aaKnown RBP1.41□□□□□ -2.18
CSMD3-210ENST00000534172 KRTAP12-4P60329 112 aa1.41□□□□□ -2.18
CSMD3-210ENST00000534172 KRTAP10-4P60372 401 aaPredicted RBP1.41□□□□□ -2.18
CSMD3-210ENST00000534172 DNAH8Q96JB1 4490 aa1.41□□□□□ -2.18
CSMD3-210ENST00000534172 KRTAP5-10Q6L8G5 202 aa1.39□□□□□ -2.19
CSMD3-210ENST00000534172 SMR3BP02814 79 aaPredicted RBP1.38□□□□□ -2.19
CSMD3-210ENST00000534172 MUC17Q685J3 4493 aa1.37□□□□□ -2.19
CSMD3-210ENST00000534172 MACF1Q9UPN3 7388 aaKnown RBP1.36□□□□□ -2.19
CSMD3-210ENST00000534172 KMT2DO14686 5537 aa1.35□□□□□ -2.19
CSMD3-210ENST00000534172 AHNAK2Q8IVF2 5795 aa1.35□□□□□ -2.19
CSMD3-210ENST00000534172 RPS29P62273 56 aaKnown RBP1.34□□□□□ -2.19
CSMD3-210ENST00000534172 KRTAP19-6Q3LI70 58 aa1.34□□□□□ -2.19
CSMD3-210ENST00000534172 LPAP08519 4548 aa1.3□□□□□ -2.2
CSMD3-210ENST00000534172 TNP1P09430 55 aa1.29□□□□□ -2.2
CSMD3-210ENST00000534172 MT1HP80294 61 aa1.28□□□□□ -2.2
CSMD3-210ENST00000534172 MUC12Q9UKN1 5478 aa1.27□□□□□ -2.21
CSMD3-210ENST00000534172 C9orf92A6NGG3 77 aa1.24□□□□□ -2.21
CSMD3-210ENST00000534172 KRTAP19-2Q3LHN2 52 aa1.23□□□□□ -2.21
CSMD3-210ENST00000534172 MDN1Q9NU22 5596 aa1.23□□□□□ -2.21
CSMD3-210ENST00000534172 MUC19Q7Z5P9 8384 aa1.21□□□□□ -2.22
CSMD3-210ENST00000534172 SPRR2EP22531 72 aa1.18□□□□□ -2.22
CSMD3-210ENST00000534172 SPRR2BP35325 72 aa1.18□□□□□ -2.22
CSMD3-210ENST00000534172 SPRR2AP35326 72 aa1.18□□□□□ -2.22
CSMD3-210ENST00000534172 KRTAP21-2Q3LI59 83 aa1.17□□□□□ -2.22
CSMD3-210ENST00000534172 SPRR2DP22532 72 aa1.16□□□□□ -2.22
CSMD3-210ENST00000534172 MUC5ACP98088 5654 aa1.16□□□□□ -2.22
CSMD3-210ENST00000534172 KRTAP4-1Q9BYQ7 146 aa1.15□□□□□ -2.22
CSMD3-210ENST00000534172 FLGP20930 4061 aaPredicted RBP1.15□□□□□ -2.23
CSMD3-210ENST00000534172 KRTAP8-1Q8IUC2 63 aa1.13□□□□□ -2.23
CSMD3-210ENST00000534172 M0R2T5 61 aa1.12□□□□□ -2.23
CSMD3-210ENST00000534172 MT2AP02795 61 aa1.07□□□□□ -2.24
CSMD3-210ENST00000534172 SPRR2FQ96RM1 72 aa1.05□□□□□ -2.24
CSMD3-210ENST00000534172 MT1FP04733 61 aa1.04□□□□□ -2.24
CSMD3-210ENST00000534172 MT4P47944 62 aa0.99□□□□□ -2.25
CSMD3-210ENST00000534172 DSTQ03001 7570 aaKnown RBP0.97□□□□□ -2.25
CSMD3-210ENST00000534172 KRTAP19-5Q3LI72 72 aa0.96□□□□□ -2.26
CSMD3-210ENST00000534172 SPRR2GQ9BYE4 73 aa0.95□□□□□ -2.26
CSMD3-210ENST00000534172 PRM1P04553 51 aa0.95□□□□□ -2.26
CSMD3-210ENST00000534172 KRTAP20-2Q3LI61 65 aa0.9□□□□□ -2.27
CSMD3-210ENST00000534172 MT1AP04731 61 aa0.89□□□□□ -2.27
CSMD3-210ENST00000534172 MT1XP80297 61 aa0.86□□□□□ -2.27
CSMD3-210ENST00000534172 KRTAP19-8Q3LI54 63 aa0.86□□□□□ -2.27
CSMD3-210ENST00000534172 MT1BP07438 61 aa0.84□□□□□ -2.27
CSMD3-210ENST00000534172 MT1EP04732 61 aa0.83□□□□□ -2.28
CSMD3-210ENST00000534172 MT1LQ93083 61 aa0.81□□□□□ -2.28
CSMD3-210ENST00000534172 KRTAP6-2Q3LI66 62 aa0.81□□□□□ -2.28
CSMD3-210ENST00000534172 KRTAP19-3Q7Z4W3 81 aa0.8□□□□□ -2.28
CSMD3-210ENST00000534172 SYNE1Q8NF91 8797 aaKnown RBP0.8□□□□□ -2.28
CSMD3-210ENST00000534172 PHGR1C9JFL3 82 aa0.77□□□□□ -2.29
CSMD3-210ENST00000534172 KRTAP19-7Q3SYF9 63 aa0.76□□□□□ -2.29
CSMD3-210ENST00000534172 MT1GP13640 62 aa0.72□□□□□ -2.29
CSMD3-210ENST00000534172 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
CSMD3-210ENST00000534172 KRTAP21-1Q3LI58 79 aa0.67□□□□□ -2.3
CSMD3-210ENST00000534172 MT1MQ8N339 61 aa0.66□□□□□ -2.3
CSMD3-210ENST00000534172 KRTAP6-1Q3LI64 71 aa0.64□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 99 ms