RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 LCE1AQ5T7P2 110 aa5.49□□□□□ -1.53
CPSF1-206ENST00000531480 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
CPSF1-206ENST00000531480 SPRR2DP22532 72 aa5.44□□□□□ -1.54
CPSF1-206ENST00000531480 GPR98Q8WXG9 6306 aa5.44□□□□□ -1.54
CPSF1-206ENST00000531480 PRAC1Q96KF2 57 aa5.39□□□□□ -1.55
CPSF1-206ENST00000531480 MT1EP04732 61 aa5.37□□□□□ -1.55
CPSF1-206ENST00000531480 SVIPQ8NHG7 77 aa5.37□□□□□ -1.55
CPSF1-206ENST00000531480 KRTAP2-2Q9BYT5 123 aa5.37□□□□□ -1.55
CPSF1-206ENST00000531480 KRTAP2-1Q9BYU5 128 aa5.37□□□□□ -1.55
CPSF1-206ENST00000531480 LCE3AQ5TA76 89 aa5.36□□□□□ -1.55
CPSF1-206ENST00000531480 KRTAP19-5Q3LI72 72 aa5.34□□□□□ -1.55
CPSF1-206ENST00000531480 LCE3BQ5TA77 95 aa5.28□□□□□ -1.56
CPSF1-206ENST00000531480 LCE5AQ5TCM9 118 aa5.27□□□□□ -1.57
CPSF1-206ENST00000531480 KRTAP19-3Q7Z4W3 81 aa5.26□□□□□ -1.57
CPSF1-206ENST00000531480 MT1GP13640 62 aa5.18□□□□□ -1.58
CPSF1-206ENST00000531480 KRTAP12-3P60328 96 aa5.18□□□□□ -1.58
CPSF1-206ENST00000531480 MT1LQ93083 61 aa5.18□□□□□ -1.58
CPSF1-206ENST00000531480 KRTAP19-4Q3LI73 84 aa5.15□□□□□ -1.59
CPSF1-206ENST00000531480 KRTAP15-1Q3LI76 137 aa5.08□□□□□ -1.6
CPSF1-206ENST00000531480 MT1MQ8N339 61 aa5.08□□□□□ -1.6
CPSF1-206ENST00000531480 DSTQ03001 7570 aaKnown RBP5□□□□□ -1.61
CPSF1-206ENST00000531480 KRTAP4-9Q9BYQ8 210 aa4.98□□□□□ -1.61
CPSF1-206ENST00000531480 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
CPSF1-206ENST00000531480 KRTAP4-7Q9BYR0 210 aa4.9□□□□□ -1.63
CPSF1-206ENST00000531480 LCE3CQ5T5A8 94 aa4.82□□□□□ -1.64
CPSF1-206ENST00000531480 LCE1DQ5T752 114 aa4.82□□□□□ -1.64
CPSF1-206ENST00000531480 MT4P47944 62 aa4.79□□□□□ -1.64
CPSF1-206ENST00000531480 HMCN1Q96RW7 5635 aa4.77□□□□□ -1.65
CPSF1-206ENST00000531480 LUZP6Q538Z0 58 aa4.77□□□□□ -1.65
CPSF1-206ENST00000531480 KRTAP5-4Q6L8H1 288 aa4.74□□□□□ -1.65
CPSF1-206ENST00000531480 LCE4AQ5TA78 99 aa4.73□□□□□ -1.65
CPSF1-206ENST00000531480 AHNAK2Q8IVF2 5795 aa4.71□□□□□ -1.65
CPSF1-206ENST00000531480 KRTAP5-5Q701N2 237 aaPredicted RBP4.69□□□□□ -1.66
CPSF1-206ENST00000531480 SPRR5A0A1B0GTR4 108 aa4.68□□□□□ -1.66
CPSF1-206ENST00000531480 LOC100996750A0A140TA64 210 aa4.63□□□□□ -1.67
CPSF1-206ENST00000531480 KRTAP5-10Q6L8G5 202 aa4.62□□□□□ -1.67
CPSF1-206ENST00000531480 KRTAP4-6Q9BYQ5 205 aa4.61□□□□□ -1.67
CPSF1-206ENST00000531480 KRTAP5-7Q6L8G8 165 aa4.55□□□□□ -1.68
CPSF1-206ENST00000531480 KRTAP9-6A8MVA2 160 aa4.54□□□□□ -1.68
CPSF1-206ENST00000531480 MT1AP04731 61 aa4.41□□□□□ -1.7
CPSF1-206ENST00000531480 KRTAP12-4P60329 112 aa4.41□□□□□ -1.7
CPSF1-206ENST00000531480 KRTAP20-2Q3LI61 65 aa4.41□□□□□ -1.7
CPSF1-206ENST00000531480 KRTAP5-3Q6L8H2 238 aa4.41□□□□□ -1.7
CPSF1-206ENST00000531480 SYNE1Q8NF91 8797 aaKnown RBP4.4□□□□□ -1.71
CPSF1-206ENST00000531480 KRTAP6-1Q3LI64 71 aa4.36□□□□□ -1.71
CPSF1-206ENST00000531480 NDUFAF8A1L188 74 aa4.33□□□□□ -1.72
CPSF1-206ENST00000531480 KRTAP9-4Q9BYQ2 154 aa4.24□□□□□ -1.73
CPSF1-206ENST00000531480 KRTAP5-2Q701N4 177 aa4.21□□□□□ -1.74
CPSF1-206ENST00000531480 AHNAKQ09666 5890 aaKnown RBP4.14□□□□□ -1.75
CPSF1-206ENST00000531480 KRTAP6-2Q3LI66 62 aa4.09□□□□□ -1.75
CPSF1-206ENST00000531480 KRTAP4-11Q9BYQ6 195 aa4.03□□□□□ -1.76
CPSF1-206ENST00000531480 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
CPSF1-206ENST00000531480 A0A0A0MQY5 61 aa4.01□□□□□ -1.77
CPSF1-206ENST00000531480 MT3P25713 68 aa4.01□□□□□ -1.77
CPSF1-206ENST00000531480 MUC5BQ9HC84 5762 aaPredicted RBP3.95□□□□□ -1.78
CPSF1-206ENST00000531480 KRTAP5-8O75690 187 aa3.9□□□□□ -1.79
CPSF1-206ENST00000531480 OBSCNQ5VST9 7968 aa3.8□□□□□ -1.8
CPSF1-206ENST00000531480 INE1O15225 51 aa3.76□□□□□ -1.81
CPSF1-206ENST00000531480 KRTAP9-9Q9BYP9 154 aa3.73□□□□□ -1.81
CPSF1-206ENST00000531480 KRTAP5-1Q6L8H4 278 aa3.71□□□□□ -1.82
CPSF1-206ENST00000531480 LCE1EQ5T753 118 aa3.66□□□□□ -1.82
CPSF1-206ENST00000531480 LCE3DQ9BYE3 92 aa3.66□□□□□ -1.82
CPSF1-206ENST00000531480 H3BS24 57 aa3.6□□□□□ -1.83
CPSF1-206ENST00000531480 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
CPSF1-206ENST00000531480 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
CPSF1-206ENST00000531480 LCE1CQ5T751 118 aa3.4□□□□□ -1.87
CPSF1-206ENST00000531480 LCE1BQ5T7P3 118 aa3.4□□□□□ -1.87
CPSF1-206ENST00000531480 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.16□□□□□ -1.9
CPSF1-206ENST00000531480 KRTAP4-12Q9BQ66 201 aa3.08□□□□□ -1.92
CPSF1-206ENST00000531480 KRTAP5-11Q6L8G4 156 aa3.05□□□□□ -1.92
CPSF1-206ENST00000531480 PRM1P04553 51 aa2.96□□□□□ -1.94
CPSF1-206ENST00000531480 KRTAP21-2Q3LI59 83 aa2.9□□□□□ -1.95
CPSF1-206ENST00000531480 LCE1FQ5T754 118 aa2.9□□□□□ -1.95
CPSF1-206ENST00000531480 PHGR1C9JFL3 82 aa2.73□□□□□ -1.97
CPSF1-206ENST00000531480 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
CPSF1-206ENST00000531480 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
CPSF1-206ENST00000531480 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
CPSF1-206ENST00000531480 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 256.2 ms