RNA–Protein interactions for RNA: ENST00000531466.1

PTPRK-220, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5

Gene PTPRK, Length 311 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-220ENST00000531466 KRTAP20-1Q3LI63 56 aa0.84□□□□□ -2.27
PTPRK-220ENST00000531466 HTN3P15516 51 aa0.83□□□□□ -2.28
PTPRK-220ENST00000531466 PKHD1L1Q86WI1 4243 aa0.82□□□□□ -2.28
PTPRK-220ENST00000531466 PKD1P98161 4303 aa0.82□□□□□ -2.28
PTPRK-220ENST00000531466 FAT3Q8TDW7 4589 aa0.82□□□□□ -2.28
PTPRK-220ENST00000531466 PRM1P04553 51 aa0.82□□□□□ -2.28
PTPRK-220ENST00000531466 TRRAPQ9Y4A5 3859 aa0.82□□□□□ -2.28
PTPRK-220ENST00000531466 HUWE1Q7Z6Z7 4374 aaKnown RBP0.82□□□□□ -2.28
PTPRK-220ENST00000531466 SSPOA2VEC9 5147 aa0.82□□□□□ -2.28
PTPRK-220ENST00000531466 DNAH1Q9P2D7 4330 aa0.81□□□□□ -2.28
PTPRK-220ENST00000531466 FAT2Q9NYQ8 4349 aa0.81□□□□□ -2.28
PTPRK-220ENST00000531466 FRAS1Q86XX4 4008 aa0.8□□□□□ -2.28
PTPRK-220ENST00000531466 GPR98Q8WXG9 6306 aa0.8□□□□□ -2.28
PTPRK-220ENST00000531466 CMYA5Q8N3K9 4069 aa0.8□□□□□ -2.28
PTPRK-220ENST00000531466 HSPG2P98160 4391 aa0.8□□□□□ -2.28
PTPRK-220ENST00000531466 HMCN2Q8NDA2 5059 aa0.79□□□□□ -2.28
PTPRK-220ENST00000531466 APOBP04114 4563 aaKnown RBP0.79□□□□□ -2.28
PTPRK-220ENST00000531466 LYSTQ99698 3801 aa0.79□□□□□ -2.28
PTPRK-220ENST00000531466 FLGP20930 4061 aaPredicted RBP0.78□□□□□ -2.28
PTPRK-220ENST00000531466 DNAH9Q9NYC9 4486 aa0.78□□□□□ -2.28
PTPRK-220ENST00000531466 HECTD4Q9Y4D8 3996 aa0.78□□□□□ -2.29
PTPRK-220ENST00000531466 DNAH6Q9C0G6 4158 aa0.77□□□□□ -2.29
PTPRK-220ENST00000531466 MACF1Q9UPN3 7388 aaKnown RBP0.77□□□□□ -2.29
PTPRK-220ENST00000531466 KMT2DO14686 5537 aa0.76□□□□□ -2.29
PTPRK-220ENST00000531466 PLECQ15149 4684 aaKnown RBP0.76□□□□□ -2.29
PTPRK-220ENST00000531466 DNAH17Q9UFH2 4485 aa0.76□□□□□ -2.29
PTPRK-220ENST00000531466 SMR3BP02814 79 aaPredicted RBP0.74□□□□□ -2.29
PTPRK-220ENST00000531466 SPRR2DP22532 72 aa0.73□□□□□ -2.29
PTPRK-220ENST00000531466 SPRR2BP35325 72 aa0.73□□□□□ -2.29
PTPRK-220ENST00000531466 KRTAP19-3Q7Z4W3 81 aa0.73□□□□□ -2.29
PTPRK-220ENST00000531466 NEBP20929 6669 aa0.73□□□□□ -2.29
PTPRK-220ENST00000531466 LRP1Q07954 4544 aaKnown RBP0.73□□□□□ -2.29
PTPRK-220ENST00000531466 PKHD1P08F94 4074 aa0.73□□□□□ -2.29
PTPRK-220ENST00000531466 DEFB4AO15263 64 aa0.72□□□□□ -2.29
PTPRK-220ENST00000531466 MT1AP04731 61 aa0.72□□□□□ -2.29
PTPRK-220ENST00000531466 DNAH5Q8TE73 4624 aa0.71□□□□□ -2.3
PTPRK-220ENST00000531466 SPRR2AP35326 72 aa0.71□□□□□ -2.3
PTPRK-220ENST00000531466 KRTAP19-5Q3LI72 72 aa0.7□□□□□ -2.3
PTPRK-220ENST00000531466 LPAP08519 4548 aa0.7□□□□□ -2.3
PTPRK-220ENST00000531466 SYNE2Q8WXH0 6885 aaKnown RBP0.69□□□□□ -2.3
PTPRK-220ENST00000531466 LRP2P98164 4655 aa0.69□□□□□ -2.3
PTPRK-220ENST00000531466 DYNC1H1Q14204 4646 aaKnown RBP0.69□□□□□ -2.3
PTPRK-220ENST00000531466 FAT1Q14517 4588 aa0.68□□□□□ -2.3
PTPRK-220ENST00000531466 HRNRQ86YZ3 2850 aaPredicted RBP0.67□□□□□ -2.3
PTPRK-220ENST00000531466 MUC17Q685J3 4493 aa0.66□□□□□ -2.3
PTPRK-220ENST00000531466 MUC12Q9UKN1 5478 aa0.66□□□□□ -2.3
PTPRK-220ENST00000531466 AHNAKQ09666 5890 aaKnown RBP0.66□□□□□ -2.3
PTPRK-220ENST00000531466 SPRR2FQ96RM1 72 aa0.65□□□□□ -2.31
PTPRK-220ENST00000531466 USH2AO75445 5202 aa0.65□□□□□ -2.31
PTPRK-220ENST00000531466 KRTAP6-2Q3LI66 62 aa0.64□□□□□ -2.31
PTPRK-220ENST00000531466 SYNE1Q8NF91 8797 aaKnown RBP0.63□□□□□ -2.31
PTPRK-220ENST00000531466 SPRR2EP22531 72 aa0.63□□□□□ -2.31
PTPRK-220ENST00000531466 DSTQ03001 7570 aaKnown RBP0.63□□□□□ -2.31
PTPRK-220ENST00000531466 LRP1BQ9NZR2 4599 aa0.62□□□□□ -2.31
PTPRK-220ENST00000531466 KRTAP21-1Q3LI58 79 aa0.62□□□□□ -2.31
PTPRK-220ENST00000531466 MDN1Q9NU22 5596 aa0.59□□□□□ -2.31
PTPRK-220ENST00000531466 MT1EP04732 61 aa0.59□□□□□ -2.31
PTPRK-220ENST00000531466 STARD9Q9P2P6 4700 aa0.58□□□□□ -2.32
PTPRK-220ENST00000531466 SPRR2GQ9BYE4 73 aa0.58□□□□□ -2.32
PTPRK-220ENST00000531466 MUC5BQ9HC84 5762 aaPredicted RBP0.56□□□□□ -2.32
PTPRK-220ENST00000531466 MT1LQ93083 61 aa0.56□□□□□ -2.32
PTPRK-220ENST00000531466 MUC5ACP98088 5654 aa0.55□□□□□ -2.32
PTPRK-220ENST00000531466 MT1HP80294 61 aa0.55□□□□□ -2.32
PTPRK-220ENST00000531466 KRTAP19-6Q3LI70 58 aa0.54□□□□□ -2.32
PTPRK-220ENST00000531466 MT1HL1P0DM35 61 aa0.5□□□□□ -2.33
PTPRK-220ENST00000531466 KRTAP19-8Q3LI54 63 aa0.48□□□□□ -2.33
PTPRK-220ENST00000531466 MT1XP80297 61 aa0.47□□□□□ -2.33
PTPRK-220ENST00000531466 MT4P47944 62 aa0.44□□□□□ -2.34
PTPRK-220ENST00000531466 PHGR1C9JFL3 82 aa0.41□□□□□ -2.34
PTPRK-220ENST00000531466 KRTAP19-7Q3SYF9 63 aa0.4□□□□□ -2.35
PTPRK-220ENST00000531466 MT2AP02795 61 aa0.39□□□□□ -2.35
PTPRK-220ENST00000531466 MT1GP13640 62 aa0.39□□□□□ -2.35
PTPRK-220ENST00000531466 MT1MQ8N339 61 aa0.38□□□□□ -2.35
PTPRK-220ENST00000531466 MT1BP07438 61 aa0.36□□□□□ -2.35
PTPRK-220ENST00000531466 KRTAP19-2Q3LHN2 52 aa0.36□□□□□ -2.35
PTPRK-220ENST00000531466 KRTAP20-2Q3LI61 65 aa0.35□□□□□ -2.35
PTPRK-220ENST00000531466 KRTAP6-1Q3LI64 71 aa0.34□□□□□ -2.36
PTPRK-220ENST00000531466 MT1FP04733 61 aa0.33□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 66.6 ms