RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 KRTAP10-7P60409 375 aaPredicted RBP2.66□□□□□ -1.98
CD44-221ENST00000526000 KTN1-AS1Q86SY8 53 aa2.65□□□□□ -1.99
CD44-221ENST00000526000 UQCR11O14957 56 aa2.63□□□□□ -1.99
CD44-221ENST00000526000 KRTAP23-1A1A580 65 aa2.62□□□□□ -1.99
CD44-221ENST00000526000 KRTAP13-4Q3LI77 160 aa2.62□□□□□ -1.99
CD44-221ENST00000526000 SPATA8Q6RVD6 105 aa2.59□□□□□ -1.99
CD44-221ENST00000526000 KRTAP10-12P60413 245 aa2.58□□□□□ -2
CD44-221ENST00000526000 A0A0D9SG42 100 aa2.57□□□□□ -2
CD44-221ENST00000526000 PSPHP1O15172 72 aa2.57□□□□□ -2
CD44-221ENST00000526000 MIR22HGQ0VDD5 57 aa2.56□□□□□ -2
CD44-221ENST00000526000 GPR98Q8WXG9 6306 aa2.55□□□□□ -2
CD44-221ENST00000526000 CAMK2N1Q7Z7J9 78 aa2.55□□□□□ -2
CD44-221ENST00000526000 KRTAP12-1P59990 96 aa2.54□□□□□ -2
CD44-221ENST00000526000 SPINT4Q6UDR6 99 aa2.54□□□□□ -2
CD44-221ENST00000526000 A6NED7 52 aa2.53□□□□□ -2
CD44-221ENST00000526000 K7ERS5 55 aa2.53□□□□□ -2
CD44-221ENST00000526000 A8MU10 97 aa2.52□□□□□ -2.01
CD44-221ENST00000526000 DSTQ03001 7570 aaKnown RBP2.51□□□□□ -2.01
CD44-221ENST00000526000 CDC42SE1Q9NRR8 79 aa2.49□□□□□ -2.01
CD44-221ENST00000526000 MT4P47944 62 aa2.47□□□□□ -2.01
CD44-221ENST00000526000 KRTAP19-7Q3SYF9 63 aa2.46□□□□□ -2.02
CD44-221ENST00000526000 KRTAP19-3Q7Z4W3 81 aa2.45□□□□□ -2.02
CD44-221ENST00000526000 MT1EP04732 61 aa2.44□□□□□ -2.02
CD44-221ENST00000526000 TNP1P09430 55 aa2.42□□□□□ -2.02
CD44-221ENST00000526000 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.41□□□□□ -2.02
CD44-221ENST00000526000 KRTAP19-5Q3LI72 72 aa2.4□□□□□ -2.03
CD44-221ENST00000526000 C10orf95Q9H7T3 257 aa2.4□□□□□ -2.03
CD44-221ENST00000526000 KRTAP25-1Q3LHN0 102 aa2.39□□□□□ -2.03
CD44-221ENST00000526000 KRTAP15-1Q3LI76 137 aa2.38□□□□□ -2.03
CD44-221ENST00000526000 PRAC1Q96KF2 57 aa2.38□□□□□ -2.03
CD44-221ENST00000526000 KRTAP4-3Q9BYR4 195 aa2.38□□□□□ -2.03
CD44-221ENST00000526000 MT1GP13640 62 aa2.37□□□□□ -2.03
CD44-221ENST00000526000 ROMO1P60602 79 aa2.36□□□□□ -2.03
CD44-221ENST00000526000 HMCN1Q96RW7 5635 aa2.35□□□□□ -2.03
CD44-221ENST00000526000 MT1MQ8N339 61 aa2.35□□□□□ -2.03
CD44-221ENST00000526000 KRTAP5-10Q6L8G5 202 aa2.34□□□□□ -2.03
CD44-221ENST00000526000 PP632Q6XCG6 107 aa2.34□□□□□ -2.03
CD44-221ENST00000526000 AHNAK2Q8IVF2 5795 aa2.34□□□□□ -2.04
CD44-221ENST00000526000 MT1LQ93083 61 aa2.32□□□□□ -2.04
CD44-221ENST00000526000 LCE3AQ5TA76 89 aa2.29□□□□□ -2.04
CD44-221ENST00000526000 KRTAP5-4Q6L8H1 288 aa2.29□□□□□ -2.04
CD44-221ENST00000526000 SPRR5A0A1B0GTR4 108 aa2.28□□□□□ -2.04
CD44-221ENST00000526000 LUZP6Q538Z0 58 aa2.28□□□□□ -2.04
CD44-221ENST00000526000 KRTAP5-7Q6L8G8 165 aa2.26□□□□□ -2.05
CD44-221ENST00000526000 KRTAP12-3P60328 96 aa2.23□□□□□ -2.05
CD44-221ENST00000526000 KRTAP20-2Q3LI61 65 aa2.21□□□□□ -2.06
CD44-221ENST00000526000 NDUFAF8A1L188 74 aa2.19□□□□□ -2.06
CD44-221ENST00000526000 KRTAP12-4P60329 112 aa2.15□□□□□ -2.07
CD44-221ENST00000526000 KRTAP5-11Q6L8G4 156 aa2.12□□□□□ -2.07
CD44-221ENST00000526000 KRTAP5-5Q701N2 237 aaPredicted RBP2.12□□□□□ -2.07
CD44-221ENST00000526000 SYNE1Q8NF91 8797 aaKnown RBP2.09□□□□□ -2.07
CD44-221ENST00000526000 LCE3CQ5T5A8 94 aa2.07□□□□□ -2.08
CD44-221ENST00000526000 KRTAP5-1Q6L8H4 278 aa2.02□□□□□ -2.09
CD44-221ENST00000526000 KRTAP5-8O75690 187 aa2.01□□□□□ -2.09
CD44-221ENST00000526000 KRTAP4-4Q9BYR3 166 aa2□□□□□ -2.09
CD44-221ENST00000526000 KRTAP6-1Q3LI64 71 aa1.99□□□□□ -2.09
CD44-221ENST00000526000 KRTAP5-2Q701N4 177 aa1.96□□□□□ -2.1
CD44-221ENST00000526000 AHNAKQ09666 5890 aaKnown RBP1.96□□□□□ -2.1
CD44-221ENST00000526000 MT1AP04731 61 aa1.95□□□□□ -2.1
CD44-221ENST00000526000 KRTAP6-2Q3LI66 62 aa1.94□□□□□ -2.1
CD44-221ENST00000526000 MUC5BQ9HC84 5762 aaPredicted RBP1.92□□□□□ -2.1
CD44-221ENST00000526000 MUC5ACP98088 5654 aa1.91□□□□□ -2.1
CD44-221ENST00000526000 KRTAP9-6A8MVA2 160 aa1.9□□□□□ -2.11
CD44-221ENST00000526000 LCE1EQ5T753 118 aa1.89□□□□□ -2.11
CD44-221ENST00000526000 OBSCNQ5VST9 7968 aa1.89□□□□□ -2.11
CD44-221ENST00000526000 INE1O15225 51 aa1.84□□□□□ -2.11
CD44-221ENST00000526000 MT3P25713 68 aa1.83□□□□□ -2.12
CD44-221ENST00000526000 LCE1FQ5T754 118 aa1.7□□□□□ -2.14
CD44-221ENST00000526000 LCE1BQ5T7P3 118 aa1.68□□□□□ -2.14
CD44-221ENST00000526000 LCE3DQ9BYE3 92 aa1.54□□□□□ -2.16
CD44-221ENST00000526000 LCE1CQ5T751 118 aa1.53□□□□□ -2.16
CD44-221ENST00000526000 LCE3EQ5T5B0 92 aa1.48□□□□□ -2.17
CD44-221ENST00000526000 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
CD44-221ENST00000526000 KRTAP21-2Q3LI59 83 aa1.29□□□□□ -2.2
CD44-221ENST00000526000 MUC19Q7Z5P9 8384 aa1.19□□□□□ -2.22
CD44-221ENST00000526000 PRM1P04553 51 aa1.18□□□□□ -2.22
CD44-221ENST00000526000 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
CD44-221ENST00000526000 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 87.7 ms