RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 KALRNO60229 2985 aa0.28□□□□□ -2.36
CPNE3-207ENST00000523588 BOD1L1Q8NFC6 3051 aa0.28□□□□□ -2.36
CPNE3-207ENST00000523588 VPS13AQ96RL7 3174 aa0.28□□□□□ -2.37
CPNE3-207ENST00000523588 ZZEF1O43149 2961 aa0.27□□□□□ -2.37
CPNE3-207ENST00000523588 CENPEQ02224 2701 aa0.27□□□□□ -2.37
CPNE3-207ENST00000523588 TGP01266 2768 aa0.27□□□□□ -2.37
CPNE3-207ENST00000523588 LRP1BQ9NZR2 4599 aa0.27□□□□□ -2.37
CPNE3-207ENST00000523588 SPRR2DP22532 72 aa0.27□□□□□ -2.37
CPNE3-207ENST00000523588 USP34Q70CQ2 3546 aa0.27□□□□□ -2.37
CPNE3-207ENST00000523588 UTP20O75691 2785 aaKnown RBP0.27□□□□□ -2.37
CPNE3-207ENST00000523588 MUC17Q685J3 4493 aa0.26□□□□□ -2.37
CPNE3-207ENST00000523588 ITPR3Q14573 2671 aa0.26□□□□□ -2.37
CPNE3-207ENST00000523588 CFAP46Q8IYW2 2715 aa0.26□□□□□ -2.37
CPNE3-207ENST00000523588 DYNC1H1Q14204 4646 aaKnown RBP0.26□□□□□ -2.37
CPNE3-207ENST00000523588 DNAH12Q6ZR08 3092 aa0.26□□□□□ -2.37
CPNE3-207ENST00000523588 SRCAPQ6ZRS2 3230 aa0.26□□□□□ -2.37
CPNE3-207ENST00000523588 SPRR2BP35325 72 aa0.26□□□□□ -2.37
CPNE3-207ENST00000523588 TACC2O95359 2948 aa0.26□□□□□ -2.37
CPNE3-207ENST00000523588 NBEAQ8NFP9 2946 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 LRBAP50851 2863 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 HRNRQ86YZ3 2850 aaPredicted RBP0.25□□□□□ -2.37
CPNE3-207ENST00000523588 TEX15Q9BXT5 2789 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 TLN1Q9Y490 2541 aaKnown RBP0.25□□□□□ -2.37
CPNE3-207ENST00000523588 HERC2O95714 4834 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 ASPMQ8IZT6 3477 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 UTRNP46939 3433 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 LAMA3Q16787 3333 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 EP400Q96L91 3159 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 LOC400499M0QZD8 3231 aa0.25□□□□□ -2.37
CPNE3-207ENST00000523588 MAP1AP78559 2803 aaPredicted RBP0.24□□□□□ -2.37
CPNE3-207ENST00000523588 PKD1L1Q8TDX9 2849 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 MYO9AB2RTY4 2548 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 VCANP13611 3396 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 SPRR2AP35326 72 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 SPRR2FQ96RM1 72 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 MYO15AQ9UKN7 3530 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 FLNBO75369 2602 aaKnown RBP0.24□□□□□ -2.37
CPNE3-207ENST00000523588 LAMA2P24043 3122 aaKnown RBP0.24□□□□□ -2.37
CPNE3-207ENST00000523588 LAMA1P25391 3075 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 ADGRG4Q8IZF6 3080 aa0.24□□□□□ -2.37
CPNE3-207ENST00000523588 STARD9Q9P2P6 4700 aa0.23□□□□□ -2.37
CPNE3-207ENST00000523588 MUC3AQ02505 3323 aa0.23□□□□□ -2.37
CPNE3-207ENST00000523588 MXRA5Q9NR99 2828 aa0.23□□□□□ -2.37
CPNE3-207ENST00000523588 PCNTO95613 3336 aa0.23□□□□□ -2.37
CPNE3-207ENST00000523588 SPRR2EP22531 72 aa0.23□□□□□ -2.37
CPNE3-207ENST00000523588 MGAM2Q2M2H8 2515 aa0.23□□□□□ -2.37
CPNE3-207ENST00000523588 CENPFP49454 3210 aa0.23□□□□□ -2.37
CPNE3-207ENST00000523588 ITPR2Q14571 2701 aa0.22□□□□□ -2.37
CPNE3-207ENST00000523588 IGSF10Q6WRI0 2623 aa0.22□□□□□ -2.37
CPNE3-207ENST00000523588 MT1EP04732 61 aa0.22□□□□□ -2.37
CPNE3-207ENST00000523588 BRCA2P51587 3418 aa0.22□□□□□ -2.37
CPNE3-207ENST00000523588 LRP2P98164 4655 aa0.22□□□□□ -2.37
CPNE3-207ENST00000523588 NBEAL1Q6ZS30 2694 aa0.21□□□□□ -2.38
CPNE3-207ENST00000523588 UNC80Q8N2C7 3258 aa0.21□□□□□ -2.38
CPNE3-207ENST00000523588 NIPBLQ6KC79 2804 aaeCLIP0.21□□□□□ -2.38
CPNE3-207ENST00000523588 MT1LQ93083 61 aa0.21□□□□□ -2.38
CPNE3-207ENST00000523588 SPRR2GQ9BYE4 73 aa0.21□□□□□ -2.38
CPNE3-207ENST00000523588 MT1XP80297 61 aa0.2□□□□□ -2.38
CPNE3-207ENST00000523588 WDFY3Q8IZQ1 3526 aa0.2□□□□□ -2.38
CPNE3-207ENST00000523588 DNHD1Q96M86 4753 aa0.2□□□□□ -2.38
CPNE3-207ENST00000523588 CEP295Q9C0D2 2601 aa0.19□□□□□ -2.38
CPNE3-207ENST00000523588 DNAH14Q0VDD8 3507 aa0.19□□□□□ -2.38
CPNE3-207ENST00000523588 MT1HP80294 61 aa0.19□□□□□ -2.38
CPNE3-207ENST00000523588 EYSQ5T1H1 3165 aa0.19□□□□□ -2.38
CPNE3-207ENST00000523588 MT1GP13640 62 aa0.17□□□□□ -2.38
CPNE3-207ENST00000523588 KRTAP19-2Q3LHN2 52 aa0.17□□□□□ -2.38
CPNE3-207ENST00000523588 KRTAP19-8Q3LI54 63 aa0.17□□□□□ -2.38
CPNE3-207ENST00000523588 KRTAP19-7Q3SYF9 63 aa0.17□□□□□ -2.38
CPNE3-207ENST00000523588 MT1BP07438 61 aa0.15□□□□□ -2.39
CPNE3-207ENST00000523588 KRTAP6-1Q3LI64 71 aa0.15□□□□□ -2.39
CPNE3-207ENST00000523588 CDH23Q9H251 3354 aa0.13□□□□□ -2.39
CPNE3-207ENST00000523588 MT1MQ8N339 61 aa0.13□□□□□ -2.39
CPNE3-207ENST00000523588 MT2AP02795 61 aa0.12□□□□□ -2.39
CPNE3-207ENST00000523588 MT1FP04733 61 aa0.1□□□□□ -2.39
CPNE3-207ENST00000523588 MT1HL1P0DM35 61 aa0.08□□□□□ -2.4
CPNE3-207ENST00000523588 KRTAP20-2Q3LI61 65 aa0.03□□□□□ -2.4
CPNE3-207ENST00000523588 MT4P47944 62 aa0.02□□□□□ -2.41
CPNE3-207ENST00000523588 KRTAP19-6Q3LI70 58 aa-0.03□□□□□ -2.41
Retrieved 78 of 20,778 RNA–protein pairs in 62.5 ms