RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 MT3P25713 68 aa3.98□□□□□ -1.77
TOPBP1-209ENST00000513818 KRTAP10-7P60409 375 aaPredicted RBP3.96□□□□□ -1.78
TOPBP1-209ENST00000513818 Q1T7F1 81 aa3.96□□□□□ -1.78
TOPBP1-209ENST00000513818 UQCR11O14957 56 aa3.94□□□□□ -1.78
TOPBP1-209ENST00000513818 KRTAP6-3Q3LI67 103 aa3.91□□□□□ -1.78
TOPBP1-209ENST00000513818 MUC12Q9UKN1 5478 aa3.91□□□□□ -1.78
TOPBP1-209ENST00000513818 MIR22HGQ0VDD5 57 aa3.9□□□□□ -1.79
TOPBP1-209ENST00000513818 ROMO1P60602 79 aa3.89□□□□□ -1.79
TOPBP1-209ENST00000513818 KRTAP10-12P60413 245 aa3.88□□□□□ -1.79
TOPBP1-209ENST00000513818 KRTAP8-1Q8IUC2 63 aa3.85□□□□□ -1.79
TOPBP1-209ENST00000513818 MDN1Q9NU22 5596 aa3.83□□□□□ -1.8
TOPBP1-209ENST00000513818 KRTAP5-9P26371 169 aa3.82□□□□□ -1.8
TOPBP1-209ENST00000513818 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
TOPBP1-209ENST00000513818 SPRR2FQ96RM1 72 aa3.81□□□□□ -1.8
TOPBP1-209ENST00000513818 NEBP20929 6669 aa3.8□□□□□ -1.8
TOPBP1-209ENST00000513818 KRTAP2-2Q9BYT5 123 aa3.79□□□□□ -1.8
TOPBP1-209ENST00000513818 TNP1P09430 55 aa3.72□□□□□ -1.81
TOPBP1-209ENST00000513818 SPRR2EP22531 72 aa3.71□□□□□ -1.82
TOPBP1-209ENST00000513818 SPRR2BP35325 72 aa3.71□□□□□ -1.82
TOPBP1-209ENST00000513818 SPRR2AP35326 72 aa3.71□□□□□ -1.82
TOPBP1-209ENST00000513818 LCE3AQ5TA76 89 aa3.7□□□□□ -1.82
TOPBP1-209ENST00000513818 CDC42SE1Q9NRR8 79 aa3.69□□□□□ -1.82
TOPBP1-209ENST00000513818 KRTAP19-7Q3SYF9 63 aa3.68□□□□□ -1.82
TOPBP1-209ENST00000513818 KRTAP19-5Q3LI72 72 aa3.65□□□□□ -1.83
TOPBP1-209ENST00000513818 MT1EP04732 61 aa3.63□□□□□ -1.83
TOPBP1-209ENST00000513818 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
TOPBP1-209ENST00000513818 KRTAP5-11Q6L8G4 156 aa3.6□□□□□ -1.83
TOPBP1-209ENST00000513818 SPRR2DP22532 72 aa3.58□□□□□ -1.84
TOPBP1-209ENST00000513818 KRTAP20-1Q3LI63 56 aa3.55□□□□□ -1.84
TOPBP1-209ENST00000513818 KRTAP19-3Q7Z4W3 81 aa3.54□□□□□ -1.84
TOPBP1-209ENST00000513818 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.52□□□□□ -1.85
TOPBP1-209ENST00000513818 KRTAP12-3P60328 96 aa3.51□□□□□ -1.85
TOPBP1-209ENST00000513818 MT1LQ93083 61 aa3.51□□□□□ -1.85
TOPBP1-209ENST00000513818 KRTAP2-3P0C7H8 128 aa3.48□□□□□ -1.85
TOPBP1-209ENST00000513818 KRTAP2-4Q9BYR9 128 aa3.48□□□□□ -1.85
TOPBP1-209ENST00000513818 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
TOPBP1-209ENST00000513818 MT1MQ8N339 61 aa3.45□□□□□ -1.86
TOPBP1-209ENST00000513818 MT1GP13640 62 aa3.44□□□□□ -1.86
TOPBP1-209ENST00000513818 KRTAP4-3Q9BYR4 195 aa3.42□□□□□ -1.86
TOPBP1-209ENST00000513818 PP632Q6XCG6 107 aa3.41□□□□□ -1.86
TOPBP1-209ENST00000513818 DSTQ03001 7570 aaKnown RBP3.41□□□□□ -1.86
TOPBP1-209ENST00000513818 KRTAP2-1Q9BYU5 128 aa3.38□□□□□ -1.87
TOPBP1-209ENST00000513818 LCE3CQ5T5A8 94 aa3.33□□□□□ -1.88
TOPBP1-209ENST00000513818 INE1O15225 51 aa3.3□□□□□ -1.88
TOPBP1-209ENST00000513818 SPRR5A0A1B0GTR4 108 aa3.22□□□□□ -1.89
TOPBP1-209ENST00000513818 MT4P47944 62 aa3.14□□□□□ -1.91
TOPBP1-209ENST00000513818 HMCN1Q96RW7 5635 aa3.13□□□□□ -1.91
TOPBP1-209ENST00000513818 KRTAP5-4Q6L8H1 288 aa3.12□□□□□ -1.91
TOPBP1-209ENST00000513818 KRTAP5-5Q701N2 237 aaPredicted RBP3.12□□□□□ -1.91
TOPBP1-209ENST00000513818 KRTAP9-6A8MVA2 160 aa3.11□□□□□ -1.91
TOPBP1-209ENST00000513818 KRTAP5-1Q6L8H4 278 aa3.09□□□□□ -1.91
TOPBP1-209ENST00000513818 SYNE1Q8NF91 8797 aaKnown RBP3.06□□□□□ -1.92
TOPBP1-209ENST00000513818 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
TOPBP1-209ENST00000513818 KRTAP6-1Q3LI64 71 aa2.98□□□□□ -1.93
TOPBP1-209ENST00000513818 AHNAK2Q8IVF2 5795 aa2.97□□□□□ -1.93
TOPBP1-209ENST00000513818 MT1AP04731 61 aa2.97□□□□□ -1.93
TOPBP1-209ENST00000513818 KRTAP20-2Q3LI61 65 aa2.96□□□□□ -1.94
TOPBP1-209ENST00000513818 KRTAP12-4P60329 112 aa2.95□□□□□ -1.94
TOPBP1-209ENST00000513818 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
TOPBP1-209ENST00000513818 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
TOPBP1-209ENST00000513818 KRTAP6-2Q3LI66 62 aa2.79□□□□□ -1.96
TOPBP1-209ENST00000513818 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
TOPBP1-209ENST00000513818 KRTAP5-10Q6L8G5 202 aa2.77□□□□□ -1.97
TOPBP1-209ENST00000513818 OBSCNQ5VST9 7968 aa2.74□□□□□ -1.97
TOPBP1-209ENST00000513818 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
TOPBP1-209ENST00000513818 KRTAP5-7Q6L8G8 165 aa2.6□□□□□ -1.99
TOPBP1-209ENST00000513818 KRTAP5-8O75690 187 aa2.54□□□□□ -2
TOPBP1-209ENST00000513818 MUC5ACP98088 5654 aa2.5□□□□□ -2.01
TOPBP1-209ENST00000513818 AHNAKQ09666 5890 aaKnown RBP2.37□□□□□ -2.03
TOPBP1-209ENST00000513818 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
TOPBP1-209ENST00000513818 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
TOPBP1-209ENST00000513818 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
TOPBP1-209ENST00000513818 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
TOPBP1-209ENST00000513818 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
TOPBP1-209ENST00000513818 PRM1P04553 51 aa1.88□□□□□ -2.11
TOPBP1-209ENST00000513818 PHGR1C9JFL3 82 aa1.73□□□□□ -2.13
TOPBP1-209ENST00000513818 KRTAP21-1Q3LI58 79 aa1.18□□□□□ -2.22
TOPBP1-209ENST00000513818 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 133.4 ms