RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 KRTAP4-4Q9BYR3 166 aa3.92□□□□□ -1.78
NUP54-211ENST00000512151 MIR22HGQ0VDD5 57 aa3.89□□□□□ -1.79
NUP54-211ENST00000512151 PMAIP1Q13794 54 aa3.89□□□□□ -1.79
NUP54-211ENST00000512151 HMCN1Q96RW7 5635 aa3.88□□□□□ -1.79
NUP54-211ENST00000512151 DSTQ03001 7570 aaKnown RBP3.88□□□□□ -1.79
NUP54-211ENST00000512151 AHNAK2Q8IVF2 5795 aa3.86□□□□□ -1.79
NUP54-211ENST00000512151 A0A1B0GU33 70 aa3.85□□□□□ -1.79
NUP54-211ENST00000512151 MT1XP80297 61 aa3.83□□□□□ -1.8
NUP54-211ENST00000512151 H0YAA0 97 aa3.82□□□□□ -1.8
NUP54-211ENST00000512151 KRTAP5-10Q6L8G5 202 aa3.81□□□□□ -1.8
NUP54-211ENST00000512151 ADM2Q7Z4H4 148 aa3.81□□□□□ -1.8
NUP54-211ENST00000512151 KTN1-AS1Q86SY8 53 aa3.8□□□□□ -1.8
NUP54-211ENST00000512151 P0C880 135 aa3.78□□□□□ -1.8
NUP54-211ENST00000512151 KRTAP12-2P59991 146 aa3.78□□□□□ -1.8
NUP54-211ENST00000512151 K7ERS5 55 aa3.76□□□□□ -1.81
NUP54-211ENST00000512151 LCE1EQ5T753 118 aa3.74□□□□□ -1.81
NUP54-211ENST00000512151 PRO2289Q9P1D8 64 aa3.73□□□□□ -1.81
NUP54-211ENST00000512151 KRTAP5-7Q6L8G8 165 aa3.72□□□□□ -1.81
NUP54-211ENST00000512151 M0QZ58 72 aa3.71□□□□□ -1.82
NUP54-211ENST00000512151 KRTAP13-4Q3LI77 160 aa3.71□□□□□ -1.82
NUP54-211ENST00000512151 CRIPTQ9P021 101 aa3.71□□□□□ -1.82
NUP54-211ENST00000512151 MT4P47944 62 aa3.66□□□□□ -1.82
NUP54-211ENST00000512151 R4GN34 69 aa3.66□□□□□ -1.82
NUP54-211ENST00000512151 A0A0D9SG42 100 aa3.63□□□□□ -1.83
NUP54-211ENST00000512151 PRAC1Q96KF2 57 aa3.63□□□□□ -1.83
NUP54-211ENST00000512151 SPRR5A0A1B0GTR4 108 aa3.62□□□□□ -1.83
NUP54-211ENST00000512151 KRTAP10-12P60413 245 aa3.6□□□□□ -1.83
NUP54-211ENST00000512151 LINC01554Q52M75 96 aa3.6□□□□□ -1.83
NUP54-211ENST00000512151 KRTAP12-1P59990 96 aa3.59□□□□□ -1.83
NUP54-211ENST00000512151 ROMO1P60602 79 aa3.57□□□□□ -1.84
NUP54-211ENST00000512151 PLAC4Q8WY50 150 aa3.56□□□□□ -1.84
NUP54-211ENST00000512151 OBSCNQ5VST9 7968 aa3.56□□□□□ -1.84
NUP54-211ENST00000512151 SPINT4Q6UDR6 99 aa3.53□□□□□ -1.84
NUP54-211ENST00000512151 KRTAP25-1Q3LHN0 102 aa3.52□□□□□ -1.85
NUP54-211ENST00000512151 KRTAP19-3Q7Z4W3 81 aa3.48□□□□□ -1.85
NUP54-211ENST00000512151 KRTAP5-2Q701N4 177 aa3.45□□□□□ -1.86
NUP54-211ENST00000512151 KRTAP19-7Q3SYF9 63 aa3.43□□□□□ -1.86
NUP54-211ENST00000512151 A0A0A0MQY5 61 aa3.42□□□□□ -1.86
NUP54-211ENST00000512151 MT1EP04732 61 aa3.42□□□□□ -1.86
NUP54-211ENST00000512151 CAMK2N1Q7Z7J9 78 aa3.39□□□□□ -1.87
NUP54-211ENST00000512151 C10orf95Q9H7T3 257 aa3.38□□□□□ -1.87
NUP54-211ENST00000512151 KRTAP4-3Q9BYR4 195 aa3.36□□□□□ -1.87
NUP54-211ENST00000512151 AHNAKQ09666 5890 aaKnown RBP3.36□□□□□ -1.87
NUP54-211ENST00000512151 PP632Q6XCG6 107 aa3.35□□□□□ -1.87
NUP54-211ENST00000512151 MT1GP13640 62 aa3.3□□□□□ -1.88
NUP54-211ENST00000512151 KRTAP20-2Q3LI61 65 aa3.3□□□□□ -1.88
NUP54-211ENST00000512151 MT1MQ8N339 61 aa3.29□□□□□ -1.88
NUP54-211ENST00000512151 MUC5ACP98088 5654 aa3.28□□□□□ -1.88
NUP54-211ENST00000512151 TNP1P09430 55 aa3.26□□□□□ -1.89
NUP54-211ENST00000512151 MUC5BQ9HC84 5762 aaPredicted RBP3.25□□□□□ -1.89
NUP54-211ENST00000512151 KRTAP19-5Q3LI72 72 aa3.19□□□□□ -1.9
NUP54-211ENST00000512151 MT1LQ93083 61 aa3.18□□□□□ -1.9
NUP54-211ENST00000512151 MT3P25713 68 aa3.15□□□□□ -1.9
NUP54-211ENST00000512151 LCE3AQ5TA76 89 aa3.15□□□□□ -1.9
NUP54-211ENST00000512151 KRTAP5-8O75690 187 aa3.11□□□□□ -1.91
NUP54-211ENST00000512151 KRTAP9-6A8MVA2 160 aa3.1□□□□□ -1.91
NUP54-211ENST00000512151 KRTAP5-5Q701N2 237 aaPredicted RBP3.08□□□□□ -1.92
NUP54-211ENST00000512151 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
NUP54-211ENST00000512151 SYNE1Q8NF91 8797 aaKnown RBP3.02□□□□□ -1.93
NUP54-211ENST00000512151 KRTAP12-3P60328 96 aa3.01□□□□□ -1.93
NUP54-211ENST00000512151 LUZP6Q538Z0 58 aa2.98□□□□□ -1.93
NUP54-211ENST00000512151 NDUFAF8A1L188 74 aa2.97□□□□□ -1.93
NUP54-211ENST00000512151 LCE1FQ5T754 118 aa2.83□□□□□ -1.96
NUP54-211ENST00000512151 LCE3CQ5T5A8 94 aa2.8□□□□□ -1.96
NUP54-211ENST00000512151 KRTAP6-1Q3LI64 71 aa2.74□□□□□ -1.97
NUP54-211ENST00000512151 KRTAP6-2Q3LI66 62 aa2.7□□□□□ -1.98
NUP54-211ENST00000512151 MT1AP04731 61 aa2.67□□□□□ -1.98
NUP54-211ENST00000512151 INE1O15225 51 aa2.56□□□□□ -2
NUP54-211ENST00000512151 LCE3EQ5T5B0 92 aa2.43□□□□□ -2.02
NUP54-211ENST00000512151 LCE1CQ5T751 118 aa2.36□□□□□ -2.03
NUP54-211ENST00000512151 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
NUP54-211ENST00000512151 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
NUP54-211ENST00000512151 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
NUP54-211ENST00000512151 LCE3DQ9BYE3 92 aa2.1□□□□□ -2.07
NUP54-211ENST00000512151 PRM1P04553 51 aa1.86□□□□□ -2.11
NUP54-211ENST00000512151 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
NUP54-211ENST00000512151 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
NUP54-211ENST00000512151 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 125.9 ms