RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 PRO0628Q9UI54 55 aa3.66□□□□□ -1.82
NEDD9-211ENST00000508546 A0A0D9SG42 100 aa3.63□□□□□ -1.83
NEDD9-211ENST00000508546 KRTAP5-3Q6L8H2 238 aa3.63□□□□□ -1.83
NEDD9-211ENST00000508546 LCE5AQ5TCM9 118 aa3.62□□□□□ -1.83
NEDD9-211ENST00000508546 LINC01554Q52M75 96 aa3.61□□□□□ -1.83
NEDD9-211ENST00000508546 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
NEDD9-211ENST00000508546 K7ERS5 55 aa3.58□□□□□ -1.84
NEDD9-211ENST00000508546 KRTAP19-3Q7Z4W3 81 aa3.56□□□□□ -1.84
NEDD9-211ENST00000508546 KRTAP12-1P59990 96 aa3.55□□□□□ -1.84
NEDD9-211ENST00000508546 PMAIP1Q13794 54 aa3.54□□□□□ -1.84
NEDD9-211ENST00000508546 SPINT4Q6UDR6 99 aa3.54□□□□□ -1.84
NEDD9-211ENST00000508546 KRTAP4-6Q9BYQ5 205 aa3.54□□□□□ -1.84
NEDD9-211ENST00000508546 KRTAP19-7Q3SYF9 63 aa3.53□□□□□ -1.84
NEDD9-211ENST00000508546 MT1EP04732 61 aa3.51□□□□□ -1.85
NEDD9-211ENST00000508546 KRTAP5-4Q6L8H1 288 aa3.47□□□□□ -1.85
NEDD9-211ENST00000508546 MT1GP13640 62 aa3.45□□□□□ -1.86
NEDD9-211ENST00000508546 CAMK2N1Q7Z7J9 78 aa3.44□□□□□ -1.86
NEDD9-211ENST00000508546 AHNAKQ09666 5890 aaKnown RBP3.44□□□□□ -1.86
NEDD9-211ENST00000508546 ROMO1P60602 79 aa3.41□□□□□ -1.86
NEDD9-211ENST00000508546 PP632Q6XCG6 107 aa3.41□□□□□ -1.86
NEDD9-211ENST00000508546 KTN1-AS1Q86SY8 53 aa3.41□□□□□ -1.86
NEDD9-211ENST00000508546 MT1MQ8N339 61 aa3.37□□□□□ -1.87
NEDD9-211ENST00000508546 MUC5ACP98088 5654 aa3.37□□□□□ -1.87
NEDD9-211ENST00000508546 C10orf95Q9H7T3 257 aa3.35□□□□□ -1.87
NEDD9-211ENST00000508546 KRTAP19-5Q3LI72 72 aa3.34□□□□□ -1.87
NEDD9-211ENST00000508546 KRTAP20-2Q3LI61 65 aa3.32□□□□□ -1.88
NEDD9-211ENST00000508546 SVIPQ8NHG7 77 aa3.32□□□□□ -1.88
NEDD9-211ENST00000508546 MUC5BQ9HC84 5762 aaPredicted RBP3.31□□□□□ -1.88
NEDD9-211ENST00000508546 PRAC1Q96KF2 57 aa3.31□□□□□ -1.88
NEDD9-211ENST00000508546 MT1LQ93083 61 aa3.3□□□□□ -1.88
NEDD9-211ENST00000508546 KRTAP25-1Q3LHN0 102 aa3.28□□□□□ -1.88
NEDD9-211ENST00000508546 TNP1P09430 55 aa3.27□□□□□ -1.89
NEDD9-211ENST00000508546 KRTAP4-3Q9BYR4 195 aa3.27□□□□□ -1.89
NEDD9-211ENST00000508546 KRTAP4-11Q9BYQ6 195 aa3.17□□□□□ -1.9
NEDD9-211ENST00000508546 KRTAP4-7Q9BYR0 210 aa3.17□□□□□ -1.9
NEDD9-211ENST00000508546 KRTAP23-1A1A580 65 aa3.15□□□□□ -1.91
NEDD9-211ENST00000508546 KRTAP5-8O75690 187 aa3.15□□□□□ -1.91
NEDD9-211ENST00000508546 KRTAP12-4P60329 112 aa3.13□□□□□ -1.91
NEDD9-211ENST00000508546 LCE3AQ5TA76 89 aa3.13□□□□□ -1.91
NEDD9-211ENST00000508546 KRTAP5-5Q701N2 237 aaPredicted RBP3.13□□□□□ -1.91
NEDD9-211ENST00000508546 SYNE1Q8NF91 8797 aaKnown RBP3.08□□□□□ -1.92
NEDD9-211ENST00000508546 KRTAP12-3P60328 96 aa3□□□□□ -1.93
NEDD9-211ENST00000508546 KRTAP9-9Q9BYP9 154 aa3□□□□□ -1.93
NEDD9-211ENST00000508546 KRTAP5-2Q701N4 177 aa2.96□□□□□ -1.94
NEDD9-211ENST00000508546 LOC100996750A0A140TA64 210 aa2.95□□□□□ -1.94
NEDD9-211ENST00000508546 KRTAP15-1Q3LI76 137 aa2.93□□□□□ -1.94
NEDD9-211ENST00000508546 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
NEDD9-211ENST00000508546 KRTAP19-4Q3LI73 84 aa2.86□□□□□ -1.95
NEDD9-211ENST00000508546 MT1AP04731 61 aa2.81□□□□□ -1.96
NEDD9-211ENST00000508546 KRTAP6-1Q3LI64 71 aa2.81□□□□□ -1.96
NEDD9-211ENST00000508546 LCE3CQ5T5A8 94 aa2.8□□□□□ -1.96
NEDD9-211ENST00000508546 KRTAP5-1Q6L8H4 278 aa2.75□□□□□ -1.97
NEDD9-211ENST00000508546 KRTAP9-4Q9BYQ2 154 aa2.75□□□□□ -1.97
NEDD9-211ENST00000508546 KRTAP6-2Q3LI66 62 aa2.73□□□□□ -1.97
NEDD9-211ENST00000508546 LUZP6Q538Z0 58 aa2.72□□□□□ -1.97
NEDD9-211ENST00000508546 NDUFAF8A1L188 74 aa2.64□□□□□ -1.99
NEDD9-211ENST00000508546 KRTAP9-6A8MVA2 160 aa2.63□□□□□ -1.99
NEDD9-211ENST00000508546 MT3P25713 68 aa2.58□□□□□ -2
NEDD9-211ENST00000508546 LCE1EQ5T753 118 aa2.47□□□□□ -2.01
NEDD9-211ENST00000508546 KRTAP4-12Q9BQ66 201 aa2.35□□□□□ -2.03
NEDD9-211ENST00000508546 KRTAP4-2Q9BYR5 136 aa2.35□□□□□ -2.03
NEDD9-211ENST00000508546 A0A0A0MQY5 61 aa2.33□□□□□ -2.04
NEDD9-211ENST00000508546 LCE1BQ5T7P3 118 aa2.31□□□□□ -2.04
NEDD9-211ENST00000508546 H3BS24 57 aa2.3□□□□□ -2.04
NEDD9-211ENST00000508546 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
NEDD9-211ENST00000508546 PHGR1C9JFL3 82 aa2.28□□□□□ -2.04
NEDD9-211ENST00000508546 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
NEDD9-211ENST00000508546 INE1O15225 51 aa2.18□□□□□ -2.06
NEDD9-211ENST00000508546 LCE1FQ5T754 118 aa2.14□□□□□ -2.07
NEDD9-211ENST00000508546 LCE3DQ9BYE3 92 aa2.1□□□□□ -2.07
NEDD9-211ENST00000508546 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.05□□□□□ -2.08
NEDD9-211ENST00000508546 LCE3EQ5T5B0 92 aa2.04□□□□□ -2.08
NEDD9-211ENST00000508546 KRTAP21-2Q3LI59 83 aa1.86□□□□□ -2.11
NEDD9-211ENST00000508546 MUC19Q7Z5P9 8384 aa1.84□□□□□ -2.11
NEDD9-211ENST00000508546 PRM1P04553 51 aa1.79□□□□□ -2.12
NEDD9-211ENST00000508546 KRTAP4-4Q9BYR3 166 aa1.73□□□□□ -2.13
NEDD9-211ENST00000508546 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
NEDD9-211ENST00000508546 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 11.5 ms