RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	SPRR2E	P22531	72 aa		4.27	□□□□□ -1.73
NR1I3-222	ENST00000506018	SPRR2B	P35325	72 aa		4.27	□□□□□ -1.73
NR1I3-222	ENST00000506018	SPRR2A	P35326	72 aa		4.27	□□□□□ -1.73
NR1I3-222	ENST00000506018	KRTAP2-3	P0C7H8	128 aa		4.26	□□□□□ -1.73
NR1I3-222	ENST00000506018	KRTAP2-4	Q9BYR9	128 aa		4.26	□□□□□ -1.73
NR1I3-222	ENST00000506018	MDN1	Q9NU22	5596 aa		4.25	□□□□□ -1.73
NR1I3-222	ENST00000506018		A8MU10	97 aa		4.25	□□□□□ -1.73
NR1I3-222	ENST00000506018	SPINT4	Q6UDR6	99 aa		4.25	□□□□□ -1.73
NR1I3-222	ENST00000506018	PRO0628	Q9UI54	55 aa		4.23	□□□□□ -1.73
NR1I3-222	ENST00000506018	CAMK2N1	Q7Z7J9	78 aa		4.21	□□□□□ -1.74
NR1I3-222	ENST00000506018	KRTAP12-1	P59990	96 aa		4.2	□□□□□ -1.74
NR1I3-222	ENST00000506018	KRTAP10-12	P60413	245 aa		4.15	□□□□□ -1.74
NR1I3-222	ENST00000506018	SPRR2D	P22532	72 aa		4.14	□□□□□ -1.75
NR1I3-222	ENST00000506018	KRTAP10-7	P60409	375 aa	Predicted RBP	4.14	□□□□□ -1.75
NR1I3-222	ENST00000506018	KRTAP2-2	Q9BYT5	123 aa		4.12	□□□□□ -1.75
NR1I3-222	ENST00000506018	KRTAP2-1	Q9BYU5	128 aa		4.12	□□□□□ -1.75
NR1I3-222	ENST00000506018	PMAIP1	Q13794	54 aa		4.08	□□□□□ -1.76
NR1I3-222	ENST00000506018	MT3	P25713	68 aa		4.02	□□□□□ -1.77
NR1I3-222	ENST00000506018	ROMO1	P60602	79 aa		3.99	□□□□□ -1.77
NR1I3-222	ENST00000506018	TNP1	P09430	55 aa		3.98	□□□□□ -1.77
NR1I3-222	ENST00000506018	C10orf95	Q9H7T3	257 aa		3.97	□□□□□ -1.77
NR1I3-222	ENST00000506018	KRTAP25-1	Q3LHN0	102 aa		3.94	□□□□□ -1.78
NR1I3-222	ENST00000506018	KTN1-AS1	Q86SY8	53 aa		3.93	□□□□□ -1.78
NR1I3-222	ENST00000506018	MT1E	P04732	61 aa		3.88	□□□□□ -1.79
NR1I3-222	ENST00000506018	KRTAP19-7	Q3SYF9	63 aa		3.88	□□□□□ -1.79
NR1I3-222	ENST00000506018	KRTAP19-3	Q7Z4W3	81 aa		3.88	□□□□□ -1.79
NR1I3-222	ENST00000506018	PP632	Q6XCG6	107 aa		3.81	□□□□□ -1.8
NR1I3-222	ENST00000506018	KRTAP19-5	Q3LI72	72 aa		3.8	□□□□□ -1.8
NR1I3-222	ENST00000506018	DST	Q03001	7570 aa	Known RBP	3.8	□□□□□ -1.8
NR1I3-222	ENST00000506018	MT1G	P13640	62 aa		3.79	□□□□□ -1.8
NR1I3-222	ENST00000506018	PRAC1	Q96KF2	57 aa		3.77	□□□□□ -1.81
NR1I3-222	ENST00000506018	LCE3A	Q5TA76	89 aa		3.74	□□□□□ -1.81
NR1I3-222	ENST00000506018	MT1M	Q8N339	61 aa		3.69	□□□□□ -1.82
NR1I3-222	ENST00000506018	MT1L	Q93083	61 aa		3.69	□□□□□ -1.82
NR1I3-222	ENST00000506018	KRTAP12-3	P60328	96 aa		3.64	□□□□□ -1.83
NR1I3-222	ENST00000506018	LCE1E	Q5T753	118 aa		3.63	□□□□□ -1.83
NR1I3-222	ENST00000506018	NDUFAF8	A1L188	74 aa		3.61	□□□□□ -1.83
NR1I3-222	ENST00000506018	MT4	P47944	62 aa		3.6	□□□□□ -1.83
NR1I3-222	ENST00000506018	GPR98	Q8WXG9	6306 aa		3.56	□□□□□ -1.84
NR1I3-222	ENST00000506018	LCE1F	Q5T754	118 aa		3.56	□□□□□ -1.84
NR1I3-222	ENST00000506018	KRTAP5-11	Q6L8G4	156 aa		3.56	□□□□□ -1.84
NR1I3-222	ENST00000506018	KRTAP4-3	Q9BYR4	195 aa		3.56	□□□□□ -1.84
NR1I3-222	ENST00000506018	KRTAP5-4	Q6L8H1	288 aa		3.53	□□□□□ -1.84
NR1I3-222	ENST00000506018	HMCN1	Q96RW7	5635 aa		3.52	□□□□□ -1.85
NR1I3-222	ENST00000506018	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.46	□□□□□ -1.86
NR1I3-222	ENST00000506018	LCE3C	Q5T5A8	94 aa		3.38	□□□□□ -1.87
NR1I3-222	ENST00000506018	KRTAP5-10	Q6L8G5	202 aa		3.38	□□□□□ -1.87
NR1I3-222	ENST00000506018	AHNAK2	Q8IVF2	5795 aa		3.38	□□□□□ -1.87
NR1I3-222	ENST00000506018	KRTAP12-4	P60329	112 aa		3.38	□□□□□ -1.87
NR1I3-222	ENST00000506018	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.37	□□□□□ -1.87
NR1I3-222	ENST00000506018	SPRR5	A0A1B0GTR4	108 aa		3.36	□□□□□ -1.87
NR1I3-222	ENST00000506018	KRTAP20-2	Q3LI61	65 aa		3.35	□□□□□ -1.87
NR1I3-222	ENST00000506018	KRTAP5-7	Q6L8G8	165 aa		3.27	□□□□□ -1.89
NR1I3-222	ENST00000506018	KRTAP9-6	A8MVA2	160 aa		3.25	□□□□□ -1.89
NR1I3-222	ENST00000506018	LUZP6	Q538Z0	58 aa		3.2	□□□□□ -1.9
NR1I3-222	ENST00000506018	SYNE1	Q8NF91	8797 aa	Known RBP	3.2	□□□□□ -1.9
NR1I3-222	ENST00000506018	MT1A	P04731	61 aa		3.15	□□□□□ -1.9
NR1I3-222	ENST00000506018	KRTAP6-1	Q3LI64	71 aa		3.12	□□□□□ -1.91
NR1I3-222	ENST00000506018	KRTAP5-2	Q701N4	177 aa		3.08	□□□□□ -1.92
NR1I3-222	ENST00000506018	LCE3E	Q5T5B0	92 aa		3.03	□□□□□ -1.92
NR1I3-222	ENST00000506018	KRTAP5-1	Q6L8H4	278 aa		3.02	□□□□□ -1.93
NR1I3-222	ENST00000506018	KRTAP6-2	Q3LI66	62 aa		3	□□□□□ -1.93
NR1I3-222	ENST00000506018	KRTAP5-8	O75690	187 aa		2.96	□□□□□ -1.94
NR1I3-222	ENST00000506018	KRTAP4-4	Q9BYR3	166 aa		2.87	□□□□□ -1.95
NR1I3-222	ENST00000506018	OBSCN	Q5VST9	7968 aa		2.86	□□□□□ -1.95
NR1I3-222	ENST00000506018	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.79	□□□□□ -1.96
NR1I3-222	ENST00000506018	MUC5AC	P98088	5654 aa		2.79	□□□□□ -1.96
NR1I3-222	ENST00000506018	AHNAK	Q09666	5890 aa	Known RBP	2.75	□□□□□ -1.97
NR1I3-222	ENST00000506018	INE1	O15225	51 aa		2.56	□□□□□ -2
NR1I3-222	ENST00000506018	LCE3D	Q9BYE3	92 aa		2.54	□□□□□ -2
NR1I3-222	ENST00000506018	LCE1B	Q5T7P3	118 aa		2.52	□□□□□ -2.01
NR1I3-222	ENST00000506018	LCE1C	Q5T751	118 aa		2.49	□□□□□ -2.01
NR1I3-222	ENST00000506018	KRTAP21-2	Q3LI59	83 aa		2.04	□□□□□ -2.08
NR1I3-222	ENST00000506018	PRM1	P04553	51 aa		2.03	□□□□□ -2.08
NR1I3-222	ENST00000506018	PHGR1	C9JFL3	82 aa		2.01	□□□□□ -2.09
NR1I3-222	ENST00000506018	MUC19	Q7Z5P9	8384 aa		1.95	□□□□□ -2.1
NR1I3-222	ENST00000506018	KRTAP21-1	Q3LI58	79 aa		1.54	□□□□□ -2.16
NR1I3-222	ENST00000506018	MUC16	Q8WXI7	14507 aa		1.27	□□□□□ -2.21

Retrieved 78 of 20,778 RNA–protein pairs in 92.4 ms