RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CAMK2N1Q7Z7J9 78 aa4.15□□□□□ -1.75
NUP54-203ENST00000504173 KRTAP12-1P59990 96 aa4.14□□□□□ -1.75
NUP54-203ENST00000504173 KRTAP5-3Q6L8H2 238 aa4.13□□□□□ -1.75
NUP54-203ENST00000504173 KRTAP12-2P59991 146 aa4.12□□□□□ -1.75
NUP54-203ENST00000504173 MIR22HGQ0VDD5 57 aa4.1□□□□□ -1.75
NUP54-203ENST00000504173 DSTQ03001 7570 aaKnown RBP4.09□□□□□ -1.75
NUP54-203ENST00000504173 A6NED7 52 aa4.06□□□□□ -1.76
NUP54-203ENST00000504173 AHNAK2Q8IVF2 5795 aa4.01□□□□□ -1.77
NUP54-203ENST00000504173 KRTAP10-7P60409 375 aaPredicted RBP4□□□□□ -1.77
NUP54-203ENST00000504173 K7ERS5 55 aa3.99□□□□□ -1.77
NUP54-203ENST00000504173 KRTAP10-12P60413 245 aa3.98□□□□□ -1.77
NUP54-203ENST00000504173 KRTAP5-10Q6L8G5 202 aa3.98□□□□□ -1.77
NUP54-203ENST00000504173 HMCN1Q96RW7 5635 aa3.98□□□□□ -1.77
NUP54-203ENST00000504173 KRTAP8-1Q8IUC2 63 aa3.95□□□□□ -1.78
NUP54-203ENST00000504173 KRTAP5-7Q6L8G8 165 aa3.93□□□□□ -1.78
NUP54-203ENST00000504173 C10orf95Q9H7T3 257 aa3.93□□□□□ -1.78
NUP54-203ENST00000504173 CDC42SE1Q9NRR8 79 aa3.93□□□□□ -1.78
NUP54-203ENST00000504173 TNP1P09430 55 aa3.89□□□□□ -1.79
NUP54-203ENST00000504173 KRTAP25-1Q3LHN0 102 aa3.79□□□□□ -1.8
NUP54-203ENST00000504173 BRK1Q8WUW1 75 aa3.79□□□□□ -1.8
NUP54-203ENST00000504173 SPRR5A0A1B0GTR4 108 aa3.77□□□□□ -1.81
NUP54-203ENST00000504173 LCE3AQ5TA76 89 aa3.77□□□□□ -1.81
NUP54-203ENST00000504173 ROMO1P60602 79 aa3.76□□□□□ -1.81
NUP54-203ENST00000504173 KRTAP15-1Q3LI76 137 aa3.74□□□□□ -1.81
NUP54-203ENST00000504173 KRTAP19-7Q3SYF9 63 aa3.73□□□□□ -1.81
NUP54-203ENST00000504173 KRTAP19-5Q3LI72 72 aa3.72□□□□□ -1.81
NUP54-203ENST00000504173 KRTAP23-1A1A580 65 aa3.7□□□□□ -1.82
NUP54-203ENST00000504173 MT1EP04732 61 aa3.7□□□□□ -1.82
NUP54-203ENST00000504173 MT4P47944 62 aa3.68□□□□□ -1.82
NUP54-203ENST00000504173 KRTAP12-3P60328 96 aa3.63□□□□□ -1.83
NUP54-203ENST00000504173 KRTAP19-3Q7Z4W3 81 aa3.62□□□□□ -1.83
NUP54-203ENST00000504173 PP632Q6XCG6 107 aa3.59□□□□□ -1.83
NUP54-203ENST00000504173 AHNAKQ09666 5890 aaKnown RBP3.58□□□□□ -1.84
NUP54-203ENST00000504173 MT1LQ93083 61 aa3.57□□□□□ -1.84
NUP54-203ENST00000504173 MT1GP13640 62 aa3.56□□□□□ -1.84
NUP54-203ENST00000504173 PMAIP1Q13794 54 aa3.56□□□□□ -1.84
NUP54-203ENST00000504173 KRTAP5-4Q6L8H1 288 aa3.51□□□□□ -1.85
NUP54-203ENST00000504173 MT1MQ8N339 61 aa3.51□□□□□ -1.85
NUP54-203ENST00000504173 PRO0628Q9UI54 55 aa3.51□□□□□ -1.85
NUP54-203ENST00000504173 MUC5ACP98088 5654 aa3.46□□□□□ -1.86
NUP54-203ENST00000504173 MUC5BQ9HC84 5762 aaPredicted RBP3.44□□□□□ -1.86
NUP54-203ENST00000504173 KRTAP4-3Q9BYR4 195 aa3.41□□□□□ -1.86
NUP54-203ENST00000504173 PRAC1Q96KF2 57 aa3.37□□□□□ -1.87
NUP54-203ENST00000504173 LCE3CQ5T5A8 94 aa3.36□□□□□ -1.87
NUP54-203ENST00000504173 KRTAP20-2Q3LI61 65 aa3.33□□□□□ -1.88
NUP54-203ENST00000504173 KTN1-AS1Q86SY8 53 aa3.31□□□□□ -1.88
NUP54-203ENST00000504173 KRTAP5-8O75690 187 aa3.17□□□□□ -1.9
NUP54-203ENST00000504173 KRTAP5-5Q701N2 237 aaPredicted RBP3.17□□□□□ -1.9
NUP54-203ENST00000504173 SVIPQ8NHG7 77 aa3.17□□□□□ -1.9
NUP54-203ENST00000504173 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.91
NUP54-203ENST00000504173 KRTAP12-4P60329 112 aa3.09□□□□□ -1.91
NUP54-203ENST00000504173 KRTAP5-11Q6L8G4 156 aa3.08□□□□□ -1.92
NUP54-203ENST00000504173 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.08□□□□□ -1.92
NUP54-203ENST00000504173 MT1AP04731 61 aa3.05□□□□□ -1.92
NUP54-203ENST00000504173 SYNE1Q8NF91 8797 aaKnown RBP3.03□□□□□ -1.92
NUP54-203ENST00000504173 KRTAP6-1Q3LI64 71 aa3.02□□□□□ -1.93
NUP54-203ENST00000504173 KRTAP5-2Q701N4 177 aa3□□□□□ -1.93
NUP54-203ENST00000504173 LCE1EQ5T753 118 aa2.94□□□□□ -1.94
NUP54-203ENST00000504173 OBSCNQ5VST9 7968 aa2.93□□□□□ -1.94
NUP54-203ENST00000504173 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
NUP54-203ENST00000504173 MT3P25713 68 aa2.82□□□□□ -1.96
NUP54-203ENST00000504173 LUZP6Q538Z0 58 aa2.82□□□□□ -1.96
NUP54-203ENST00000504173 KRTAP5-1Q6L8H4 278 aa2.77□□□□□ -1.97
NUP54-203ENST00000504173 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
NUP54-203ENST00000504173 NDUFAF8A1L188 74 aa2.51□□□□□ -2.01
NUP54-203ENST00000504173 LCE1FQ5T754 118 aa2.51□□□□□ -2.01
NUP54-203ENST00000504173 LCE3DQ9BYE3 92 aa2.48□□□□□ -2.01
NUP54-203ENST00000504173 A0A0A0MQY5 61 aa2.38□□□□□ -2.03
NUP54-203ENST00000504173 LCE3EQ5T5B0 92 aa2.38□□□□□ -2.03
NUP54-203ENST00000504173 LCE1BQ5T7P3 118 aa2.34□□□□□ -2.03
NUP54-203ENST00000504173 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
NUP54-203ENST00000504173 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
NUP54-203ENST00000504173 INE1O15225 51 aa2.06□□□□□ -2.08
NUP54-203ENST00000504173 KRTAP21-2Q3LI59 83 aa1.97□□□□□ -2.09
NUP54-203ENST00000504173 PRM1P04553 51 aa1.94□□□□□ -2.1
NUP54-203ENST00000504173 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
NUP54-203ENST00000504173 KRTAP21-1Q3LI58 79 aa1.8□□□□□ -2.12
NUP54-203ENST00000504173 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 12.7 ms