RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 MT1EP04732 61 aa5.43□□□□□ -1.54
LIMS1-213ENST00000496653 LCE3AQ5TA76 89 aa5.4□□□□□ -1.54
LIMS1-213ENST00000496653 KRTAP19-5Q3LI72 72 aa5.39□□□□□ -1.55
LIMS1-213ENST00000496653 CDC42SE1Q9NRR8 79 aa5.37□□□□□ -1.55
LIMS1-213ENST00000496653 KRTAP19-3Q7Z4W3 81 aa5.36□□□□□ -1.55
LIMS1-213ENST00000496653 PRAC1Q96KF2 57 aa5.33□□□□□ -1.56
LIMS1-213ENST00000496653 LCE5AQ5TCM9 118 aa5.32□□□□□ -1.56
LIMS1-213ENST00000496653 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
LIMS1-213ENST00000496653 KRTAP2-2Q9BYT5 123 aa5.29□□□□□ -1.56
LIMS1-213ENST00000496653 KRTAP2-1Q9BYU5 128 aa5.29□□□□□ -1.56
LIMS1-213ENST00000496653 MT1GP13640 62 aa5.28□□□□□ -1.56
LIMS1-213ENST00000496653 PMAIP1Q13794 54 aa5.28□□□□□ -1.56
LIMS1-213ENST00000496653 LCE3BQ5TA77 95 aa5.27□□□□□ -1.57
LIMS1-213ENST00000496653 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
LIMS1-213ENST00000496653 ROMO1P60602 79 aa5.24□□□□□ -1.57
LIMS1-213ENST00000496653 MT1LQ93083 61 aa5.22□□□□□ -1.57
LIMS1-213ENST00000496653 MT1MQ8N339 61 aa5.14□□□□□ -1.59
LIMS1-213ENST00000496653 DSTQ03001 7570 aaKnown RBP5.09□□□□□ -1.59
LIMS1-213ENST00000496653 KRTAP19-4Q3LI73 84 aa5.09□□□□□ -1.59
LIMS1-213ENST00000496653 BRK1Q8WUW1 75 aa5.05□□□□□ -1.6
LIMS1-213ENST00000496653 KRTAP15-1Q3LI76 137 aa4.99□□□□□ -1.61
LIMS1-213ENST00000496653 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
LIMS1-213ENST00000496653 KTN1-AS1Q86SY8 53 aa4.89□□□□□ -1.63
LIMS1-213ENST00000496653 KRTAP4-7Q9BYR0 210 aa4.88□□□□□ -1.63
LIMS1-213ENST00000496653 LCE4AQ5TA78 99 aa4.87□□□□□ -1.63
LIMS1-213ENST00000496653 LCE3CQ5T5A8 94 aa4.84□□□□□ -1.63
LIMS1-213ENST00000496653 KRTAP5-4Q6L8H1 288 aa4.77□□□□□ -1.65
LIMS1-213ENST00000496653 LUZP6Q538Z0 58 aa4.76□□□□□ -1.65
LIMS1-213ENST00000496653 KRTAP4-9Q9BYQ8 210 aa4.76□□□□□ -1.65
LIMS1-213ENST00000496653 LCE1DQ5T752 114 aa4.73□□□□□ -1.65
LIMS1-213ENST00000496653 MT4P47944 62 aa4.7□□□□□ -1.66
LIMS1-213ENST00000496653 KRTAP5-5Q701N2 237 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-213ENST00000496653 HMCN1Q96RW7 5635 aa4.66□□□□□ -1.66
LIMS1-213ENST00000496653 NDUFAF8A1L188 74 aa4.65□□□□□ -1.67
LIMS1-213ENST00000496653 LOC100996750A0A140TA64 210 aa4.62□□□□□ -1.67
LIMS1-213ENST00000496653 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
LIMS1-213ENST00000496653 GPR98Q8WXG9 6306 aa4.56□□□□□ -1.68
LIMS1-213ENST00000496653 KRTAP4-6Q9BYQ5 205 aa4.56□□□□□ -1.68
LIMS1-213ENST00000496653 SPRR5A0A1B0GTR4 108 aa4.55□□□□□ -1.68
LIMS1-213ENST00000496653 KRTAP20-2Q3LI61 65 aa4.49□□□□□ -1.69
LIMS1-213ENST00000496653 MT1AP04731 61 aa4.48□□□□□ -1.69
LIMS1-213ENST00000496653 KRTAP9-6A8MVA2 160 aa4.46□□□□□ -1.7
LIMS1-213ENST00000496653 SYNE1Q8NF91 8797 aaKnown RBP4.44□□□□□ -1.7
LIMS1-213ENST00000496653 AHNAK2Q8IVF2 5795 aa4.4□□□□□ -1.7
LIMS1-213ENST00000496653 KRTAP6-1Q3LI64 71 aa4.37□□□□□ -1.71
LIMS1-213ENST00000496653 KRTAP5-3Q6L8H2 238 aa4.32□□□□□ -1.72
LIMS1-213ENST00000496653 KRTAP5-10Q6L8G5 202 aa4.28□□□□□ -1.72
LIMS1-213ENST00000496653 KRTAP9-4Q9BYQ2 154 aa4.28□□□□□ -1.72
LIMS1-213ENST00000496653 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
LIMS1-213ENST00000496653 KRTAP6-2Q3LI66 62 aa4.15□□□□□ -1.75
LIMS1-213ENST00000496653 MT3P25713 68 aa4.11□□□□□ -1.75
LIMS1-213ENST00000496653 KRTAP5-7Q6L8G8 165 aa4.11□□□□□ -1.75
LIMS1-213ENST00000496653 KRTAP9-9Q9BYP9 154 aa4.05□□□□□ -1.76
LIMS1-213ENST00000496653 KRTAP4-11Q9BYQ6 195 aa4.05□□□□□ -1.76
LIMS1-213ENST00000496653 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.78
LIMS1-213ENST00000496653 KRTAP5-8O75690 187 aa3.87□□□□□ -1.79
LIMS1-213ENST00000496653 LCE1EQ5T753 118 aa3.74□□□□□ -1.81
LIMS1-213ENST00000496653 KRTAP5-1Q6L8H4 278 aa3.72□□□□□ -1.81
LIMS1-213ENST00000496653 KRTAP4-12Q9BQ66 201 aa3.62□□□□□ -1.83
LIMS1-213ENST00000496653 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
LIMS1-213ENST00000496653 LCE1FQ5T754 118 aa3.6□□□□□ -1.83
LIMS1-213ENST00000496653 INE1O15225 51 aa3.58□□□□□ -1.84
LIMS1-213ENST00000496653 AHNAKQ09666 5890 aaKnown RBP3.58□□□□□ -1.84
LIMS1-213ENST00000496653 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
LIMS1-213ENST00000496653 LCE3DQ9BYE3 92 aa3.56□□□□□ -1.84
LIMS1-213ENST00000496653 LCE1CQ5T751 118 aa3.45□□□□□ -1.86
LIMS1-213ENST00000496653 LCE1BQ5T7P3 118 aa3.45□□□□□ -1.86
LIMS1-213ENST00000496653 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
LIMS1-213ENST00000496653 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
LIMS1-213ENST00000496653 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.17□□□□□ -1.9
LIMS1-213ENST00000496653 KRTAP5-11Q6L8G4 156 aa3.11□□□□□ -1.91
LIMS1-213ENST00000496653 KRTAP21-2Q3LI59 83 aa2.87□□□□□ -1.95
LIMS1-213ENST00000496653 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
LIMS1-213ENST00000496653 PRM1P04553 51 aa2.65□□□□□ -1.99
LIMS1-213ENST00000496653 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
LIMS1-213ENST00000496653 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
LIMS1-213ENST00000496653 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
LIMS1-213ENST00000496653 MUC16Q8WXI7 14507 aa1.72□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 64.5 ms