RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 UQCR11O14957 56 aa5.29□□□□□ -1.56
UPF3A-210ENST00000493727 A0A0D9SG42 100 aa5.27□□□□□ -1.57
UPF3A-210ENST00000493727 A6NED7 52 aa5.23□□□□□ -1.57
UPF3A-210ENST00000493727 PLAC4Q8WY50 150 aa5.23□□□□□ -1.57
UPF3A-210ENST00000493727 MIR22HGQ0VDD5 57 aa5.22□□□□□ -1.57
UPF3A-210ENST00000493727 KRTAP2-3P0C7H8 128 aa5.21□□□□□ -1.58
UPF3A-210ENST00000493727 KRTAP2-4Q9BYR9 128 aa5.21□□□□□ -1.58
UPF3A-210ENST00000493727 A8MU10 97 aa5.2□□□□□ -1.58
UPF3A-210ENST00000493727 SPINT4Q6UDR6 99 aa5.17□□□□□ -1.58
UPF3A-210ENST00000493727 KRTAP12-1P59990 96 aa5.11□□□□□ -1.59
UPF3A-210ENST00000493727 CAMK2N1Q7Z7J9 78 aa5.1□□□□□ -1.59
UPF3A-210ENST00000493727 KRTAP12-2P59991 146 aa5.09□□□□□ -1.59
UPF3A-210ENST00000493727 K7ERS5 55 aa5.08□□□□□ -1.6
UPF3A-210ENST00000493727 PRO2289Q9P1D8 64 aa5.08□□□□□ -1.6
UPF3A-210ENST00000493727 CDC42SE1Q9NRR8 79 aa5.07□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2EP22531 72 aa5.06□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2BP35325 72 aa5.06□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2AP35326 72 aa5.06□□□□□ -1.6
UPF3A-210ENST00000493727 SPRR2FQ96RM1 72 aa5.05□□□□□ -1.6
UPF3A-210ENST00000493727 KRTAP2-1Q9BYU5 128 aa5.02□□□□□ -1.61
UPF3A-210ENST00000493727 MT1XP80297 61 aa5□□□□□ -1.61
UPF3A-210ENST00000493727 BRK1Q8WUW1 75 aa4.99□□□□□ -1.61
UPF3A-210ENST00000493727 LCE3EQ5T5B0 92 aa4.98□□□□□ -1.61
UPF3A-210ENST00000493727 KRTAP8-1Q8IUC2 63 aa4.93□□□□□ -1.62
UPF3A-210ENST00000493727 GPR98Q8WXG9 6306 aa4.92□□□□□ -1.62
UPF3A-210ENST00000493727 KRTAP5-1Q6L8H4 278 aa4.92□□□□□ -1.62
UPF3A-210ENST00000493727 SPRR2DP22532 72 aa4.89□□□□□ -1.63
UPF3A-210ENST00000493727 C10orf95Q9H7T3 257 aa4.84□□□□□ -1.63
UPF3A-210ENST00000493727 TNP1P09430 55 aa4.79□□□□□ -1.64
UPF3A-210ENST00000493727 ROMO1P60602 79 aa4.78□□□□□ -1.64
UPF3A-210ENST00000493727 DSTQ03001 7570 aaKnown RBP4.78□□□□□ -1.64
UPF3A-210ENST00000493727 KRTAP25-1Q3LHN0 102 aa4.72□□□□□ -1.65
UPF3A-210ENST00000493727 PRO0628Q9UI54 55 aa4.72□□□□□ -1.65
UPF3A-210ENST00000493727 PMAIP1Q13794 54 aa4.7□□□□□ -1.66
UPF3A-210ENST00000493727 KRTAP4-4Q9BYR3 166 aa4.69□□□□□ -1.66
UPF3A-210ENST00000493727 KRTAP5-4Q6L8H1 288 aa4.67□□□□□ -1.66
UPF3A-210ENST00000493727 LCE3AQ5TA76 89 aa4.6□□□□□ -1.67
UPF3A-210ENST00000493727 PP632Q6XCG6 107 aa4.51□□□□□ -1.69
UPF3A-210ENST00000493727 KRTAP19-5Q3LI72 72 aa4.48□□□□□ -1.69
UPF3A-210ENST00000493727 HMCN1Q96RW7 5635 aa4.47□□□□□ -1.69
UPF3A-210ENST00000493727 KRTAP19-7Q3SYF9 63 aa4.45□□□□□ -1.7
UPF3A-210ENST00000493727 AHNAK2Q8IVF2 5795 aa4.45□□□□□ -1.7
UPF3A-210ENST00000493727 KRTAP12-3P60328 96 aa4.43□□□□□ -1.7
UPF3A-210ENST00000493727 KRTAP19-3Q7Z4W3 81 aa4.43□□□□□ -1.7
UPF3A-210ENST00000493727 KTN1-AS1Q86SY8 53 aa4.43□□□□□ -1.7
UPF3A-210ENST00000493727 MT1EP04732 61 aa4.41□□□□□ -1.7
UPF3A-210ENST00000493727 MT1GP13640 62 aa4.33□□□□□ -1.72
UPF3A-210ENST00000493727 KRTAP5-10Q6L8G5 202 aa4.33□□□□□ -1.72
UPF3A-210ENST00000493727 OBSCNQ5VST9 7968 aa4.32□□□□□ -1.72
UPF3A-210ENST00000493727 MT4P47944 62 aa4.31□□□□□ -1.72
UPF3A-210ENST00000493727 MT1LQ93083 61 aa4.28□□□□□ -1.72
UPF3A-210ENST00000493727 KRTAP4-3Q9BYR4 195 aa4.23□□□□□ -1.73
UPF3A-210ENST00000493727 MT1MQ8N339 61 aa4.21□□□□□ -1.74
UPF3A-210ENST00000493727 KRTAP5-7Q6L8G8 165 aa4.2□□□□□ -1.74
UPF3A-210ENST00000493727 KRTAP5-5Q701N2 237 aaPredicted RBP4.19□□□□□ -1.74
UPF3A-210ENST00000493727 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
UPF3A-210ENST00000493727 KRTAP20-2Q3LI61 65 aa3.98□□□□□ -1.77
UPF3A-210ENST00000493727 SPRR5A0A1B0GTR4 108 aa3.95□□□□□ -1.78
UPF3A-210ENST00000493727 LCE1CQ5T751 118 aa3.9□□□□□ -1.79
UPF3A-210ENST00000493727 LCE1BQ5T7P3 118 aa3.9□□□□□ -1.79
UPF3A-210ENST00000493727 SYNE1Q8NF91 8797 aaKnown RBP3.88□□□□□ -1.79
UPF3A-210ENST00000493727 KRTAP12-4P60329 112 aa3.87□□□□□ -1.79
UPF3A-210ENST00000493727 KRTAP5-2Q701N4 177 aa3.78□□□□□ -1.8
UPF3A-210ENST00000493727 AHNAKQ09666 5890 aaKnown RBP3.73□□□□□ -1.81
UPF3A-210ENST00000493727 MUC5BQ9HC84 5762 aaPredicted RBP3.72□□□□□ -1.81
UPF3A-210ENST00000493727 MUC5ACP98088 5654 aa3.7□□□□□ -1.82
UPF3A-210ENST00000493727 LUZP6Q538Z0 58 aa3.7□□□□□ -1.82
UPF3A-210ENST00000493727 MT1AP04731 61 aa3.65□□□□□ -1.83
UPF3A-210ENST00000493727 KRTAP5-8O75690 187 aa3.62□□□□□ -1.83
UPF3A-210ENST00000493727 KRTAP6-1Q3LI64 71 aa3.61□□□□□ -1.83
UPF3A-210ENST00000493727 KRTAP6-2Q3LI66 62 aa3.42□□□□□ -1.86
UPF3A-210ENST00000493727 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
UPF3A-210ENST00000493727 INE1O15225 51 aa2.8□□□□□ -1.96
UPF3A-210ENST00000493727 KRTAP21-2Q3LI59 83 aa2.78□□□□□ -1.96
UPF3A-210ENST00000493727 PHGR1C9JFL3 82 aa2.5□□□□□ -2.01
UPF3A-210ENST00000493727 PRM1P04553 51 aa2.47□□□□□ -2.01
UPF3A-210ENST00000493727 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
UPF3A-210ENST00000493727 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 7.5 ms