RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SMR3BP02814 79 aaPredicted RBP0.24□□□□□ -2.37
SMC4-220ENST00000488017 PRM1P04553 51 aa0.24□□□□□ -2.37
SMC4-220ENST00000488017 KRTAP19-5Q3LI72 72 aa0.24□□□□□ -2.37
SMC4-220ENST00000488017 KRTAP8-1Q8IUC2 63 aa0.24□□□□□ -2.37
SMC4-220ENST00000488017 U3KQA8 63 aa0.24□□□□□ -2.37
SMC4-220ENST00000488017 ACACBO00763 2458 aa0.24□□□□□ -2.37
SMC4-220ENST00000488017 MAST4O15021 2626 aa0.23□□□□□ -2.37
SMC4-220ENST00000488017 FLNAP21333 2647 aaKnown RBP0.23□□□□□ -2.37
SMC4-220ENST00000488017 SSPOA2VEC9 5147 aa0.23□□□□□ -2.37
SMC4-220ENST00000488017 PHGR1C9JFL3 82 aa0.23□□□□□ -2.37
SMC4-220ENST00000488017 KRTAP21-1Q3LI58 79 aa0.23□□□□□ -2.37
SMC4-220ENST00000488017 LINC01556Q5JQF7 62 aa0.23□□□□□ -2.37
SMC4-220ENST00000488017 RYR1P21817 5038 aa0.23□□□□□ -2.37
SMC4-220ENST00000488017 USH2AO75445 5202 aa0.23□□□□□ -2.37
SMC4-220ENST00000488017 SPTAN1Q13813 2472 aaKnown RBP0.23□□□□□ -2.37
SMC4-220ENST00000488017 UNC79Q9P2D8 2635 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 FAT4Q6V0I7 4981 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 STAB2Q8WWQ8 2551 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 MTORP42345 2549 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 FASNP49327 2511 aaKnown RBP0.22□□□□□ -2.37
SMC4-220ENST00000488017 TLN1Q9Y490 2541 aaKnown RBP0.22□□□□□ -2.37
SMC4-220ENST00000488017 TLN2Q9Y4G6 2542 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 ACANP16112 2415 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 TNP1P09430 55 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 DEFB133Q30KQ1 61 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 MYO18BQ8IUG5 2567 aa0.22□□□□□ -2.37
SMC4-220ENST00000488017 ABCA13Q86UQ4 5058 aa0.21□□□□□ -2.38
SMC4-220ENST00000488017 H3BNG1 76 aa0.21□□□□□ -2.38
SMC4-220ENST00000488017 DEFB135Q30KP9 77 aa0.21□□□□□ -2.38
SMC4-220ENST00000488017 Q9Y3F1 56 aa0.21□□□□□ -2.38
SMC4-220ENST00000488017 KIAA1109Q2LD37 5005 aa0.21□□□□□ -2.38
SMC4-220ENST00000488017 ANKHD1Q8IWZ3 2542 aaKnown RBP0.21□□□□□ -2.38
SMC4-220ENST00000488017 EPPK1P58107 5090 aaKnown RBP0.21□□□□□ -2.38
SMC4-220ENST00000488017 IGSF10Q6WRI0 2623 aa0.2□□□□□ -2.38
SMC4-220ENST00000488017 M0R2T5 61 aa0.2□□□□□ -2.38
SMC4-220ENST00000488017 DEFB4AO15263 64 aa0.2□□□□□ -2.38
SMC4-220ENST00000488017 KRTAP6-2Q3LI66 62 aa0.2□□□□□ -2.38
SMC4-220ENST00000488017 RYR2Q92736 4967 aa0.2□□□□□ -2.38
SMC4-220ENST00000488017 MGAM2Q2M2H8 2515 aa0.2□□□□□ -2.38
SMC4-220ENST00000488017 FLNBO75369 2602 aaKnown RBP0.19□□□□□ -2.38
SMC4-220ENST00000488017 MYO9AB2RTY4 2548 aa0.19□□□□□ -2.38
SMC4-220ENST00000488017 C9orf92A6NGG3 77 aa0.19□□□□□ -2.38
SMC4-220ENST00000488017 SPART-AS1P0CW21 52 aa0.19□□□□□ -2.38
SMC4-220ENST00000488017 RPS29P62273 56 aaKnown RBP0.19□□□□□ -2.38
SMC4-220ENST00000488017 KRTAP19-2Q3LHN2 52 aa0.19□□□□□ -2.38
SMC4-220ENST00000488017 CEP295Q9C0D2 2601 aa0.19□□□□□ -2.38
SMC4-220ENST00000488017 MT1AP04731 61 aa0.18□□□□□ -2.38
SMC4-220ENST00000488017 HTN3P15516 51 aa0.17□□□□□ -2.38
SMC4-220ENST00000488017 SPRR2DP22532 72 aa0.17□□□□□ -2.38
SMC4-220ENST00000488017 MT1XP80297 61 aa0.17□□□□□ -2.38
SMC4-220ENST00000488017 KRTAP19-7Q3SYF9 63 aa0.16□□□□□ -2.38
SMC4-220ENST00000488017 SPRR2FQ96RM1 72 aa0.16□□□□□ -2.38
SMC4-220ENST00000488017 SPRR2GQ9BYE4 73 aa0.16□□□□□ -2.38
SMC4-220ENST00000488017 MT1EP04732 61 aa0.15□□□□□ -2.39
SMC4-220ENST00000488017 SPRR2BP35325 72 aa0.15□□□□□ -2.39
SMC4-220ENST00000488017 MUC12Q9UKN1 5478 aa0.14□□□□□ -2.39
SMC4-220ENST00000488017 MT1BP07438 61 aa0.14□□□□□ -2.39
SMC4-220ENST00000488017 SPRR2EP22531 72 aa0.14□□□□□ -2.39
SMC4-220ENST00000488017 SPRR2AP35326 72 aa0.14□□□□□ -2.39
SMC4-220ENST00000488017 KRTAP19-8Q3LI54 63 aa0.14□□□□□ -2.39
SMC4-220ENST00000488017 MT1LQ93083 61 aa0.14□□□□□ -2.39
SMC4-220ENST00000488017 KRTAP6-1Q3LI64 71 aa0.13□□□□□ -2.39
SMC4-220ENST00000488017 GPR98Q8WXG9 6306 aa0.12□□□□□ -2.39
SMC4-220ENST00000488017 MT1GP13640 62 aa0.12□□□□□ -2.39
SMC4-220ENST00000488017 MT1HP80294 61 aa0.12□□□□□ -2.39
SMC4-220ENST00000488017 MT1MQ8N339 61 aa0.11□□□□□ -2.39
SMC4-220ENST00000488017 MT1FP04733 61 aa0.1□□□□□ -2.39
SMC4-220ENST00000488017 DSTQ03001 7570 aaKnown RBP0.1□□□□□ -2.39
SMC4-220ENST00000488017 SYNE2Q8WXH0 6885 aaKnown RBP0.09□□□□□ -2.39
SMC4-220ENST00000488017 MT2AP02795 61 aa0.09□□□□□ -2.4
SMC4-220ENST00000488017 MT1HL1P0DM35 61 aa0.08□□□□□ -2.4
SMC4-220ENST00000488017 FSIP2Q5CZC0 6907 aa0.07□□□□□ -2.4
SMC4-220ENST00000488017 NEBP20929 6669 aa0.04□□□□□ -2.4
SMC4-220ENST00000488017 MACF1Q9UPN3 7388 aaKnown RBP0.01□□□□□ -2.41
SMC4-220ENST00000488017 KRTAP20-2Q3LI61 65 aa0□□□□□ -2.41
SMC4-220ENST00000488017 MT4P47944 62 aa-0.01□□□□□ -2.41
SMC4-220ENST00000488017 KRTAP19-6Q3LI70 58 aa-0.01□□□□□ -2.41
SMC4-220ENST00000488017 KRTAP20-1Q3LI63 56 aa-0.07□□□□□ -2.42
Retrieved 78 of 20,778 RNA–protein pairs in 32.2 ms