RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, human

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM39A-208	ENST00000486159	KRTAP12-1	P59990	96 aa		4.14	□□□□□ -1.75
TMEM39A-208	ENST00000486159	SPRR2G	Q9BYE4	73 aa		4.14	□□□□□ -1.75
TMEM39A-208	ENST00000486159	KRTAP10-5	P60370	271 aa		4.12	□□□□□ -1.75
TMEM39A-208	ENST00000486159	SPINT4	Q6UDR6	99 aa		4.12	□□□□□ -1.75
TMEM39A-208	ENST00000486159	KRTAP12-2	P59991	146 aa		4.11	□□□□□ -1.75
TMEM39A-208	ENST00000486159	ROMO1	P60602	79 aa		4.1	□□□□□ -1.75
TMEM39A-208	ENST00000486159	LINC01554	Q52M75	96 aa		4.1	□□□□□ -1.75
TMEM39A-208	ENST00000486159	KRTAP5-9	P26371	169 aa		4.06	□□□□□ -1.76
TMEM39A-208	ENST00000486159	PRAC1	Q96KF2	57 aa		3.99	□□□□□ -1.77
TMEM39A-208	ENST00000486159	CAMK2N1	Q7Z7J9	78 aa		3.98	□□□□□ -1.77
TMEM39A-208	ENST00000486159	KRTAP25-1	Q3LHN0	102 aa		3.97	□□□□□ -1.77
TMEM39A-208	ENST00000486159	PLAC4	Q8WY50	150 aa		3.97	□□□□□ -1.77
TMEM39A-208	ENST00000486159	SPRR2E	P22531	72 aa		3.94	□□□□□ -1.78
TMEM39A-208	ENST00000486159	SPRR2B	P35325	72 aa		3.94	□□□□□ -1.78
TMEM39A-208	ENST00000486159	SPRR2A	P35326	72 aa		3.94	□□□□□ -1.78
TMEM39A-208	ENST00000486159	MT1X	P80297	61 aa		3.93	□□□□□ -1.78
TMEM39A-208	ENST00000486159	SPRR2F	Q96RM1	72 aa		3.93	□□□□□ -1.78
TMEM39A-208	ENST00000486159	AHNAK2	Q8IVF2	5795 aa		3.92	□□□□□ -1.78
TMEM39A-208	ENST00000486159	MT3	P25713	68 aa		3.9	□□□□□ -1.79
TMEM39A-208	ENST00000486159	C10orf95	Q9H7T3	257 aa		3.9	□□□□□ -1.79
TMEM39A-208	ENST00000486159	DST	Q03001	7570 aa	Known RBP	3.9	□□□□□ -1.79
TMEM39A-208	ENST00000486159	SPRR5	A0A1B0GTR4	108 aa		3.87	□□□□□ -1.79
TMEM39A-208	ENST00000486159	KRTAP8-1	Q8IUC2	63 aa		3.85	□□□□□ -1.79
TMEM39A-208	ENST00000486159	TNP1	P09430	55 aa		3.84	□□□□□ -1.79
TMEM39A-208	ENST00000486159	PP632	Q6XCG6	107 aa		3.84	□□□□□ -1.79
TMEM39A-208	ENST00000486159	SPRR2D	P22532	72 aa		3.82	□□□□□ -1.8
TMEM39A-208	ENST00000486159	PRO2289	Q9P1D8	64 aa		3.8	□□□□□ -1.8
TMEM39A-208	ENST00000486159	KRTAP5-10	Q6L8G5	202 aa		3.78	□□□□□ -1.8
TMEM39A-208	ENST00000486159	KRTAP10-7	P60409	375 aa	Predicted RBP	3.77	□□□□□ -1.81
TMEM39A-208	ENST00000486159	KRTAP5-7	Q6L8G8	165 aa		3.75	□□□□□ -1.81
TMEM39A-208	ENST00000486159	HMCN1	Q96RW7	5635 aa		3.75	□□□□□ -1.81
TMEM39A-208	ENST00000486159	KRTAP10-12	P60413	245 aa		3.69	□□□□□ -1.82
TMEM39A-208	ENST00000486159	AHNAK	Q09666	5890 aa	Known RBP	3.58	□□□□□ -1.84
TMEM39A-208	ENST00000486159	LCE3A	Q5TA76	89 aa		3.57	□□□□□ -1.84
TMEM39A-208	ENST00000486159	KRTAP19-7	Q3SYF9	63 aa		3.52	□□□□□ -1.85
TMEM39A-208	ENST00000486159	NDUFAF8	A1L188	74 aa		3.5	□□□□□ -1.85
TMEM39A-208	ENST00000486159	LCE1E	Q5T753	118 aa		3.49	□□□□□ -1.85
TMEM39A-208	ENST00000486159	MT1E	P04732	61 aa		3.48	□□□□□ -1.85
TMEM39A-208	ENST00000486159	KRTAP12-3	P60328	96 aa		3.47	□□□□□ -1.85
TMEM39A-208	ENST00000486159	KRTAP19-3	Q7Z4W3	81 aa		3.45	□□□□□ -1.86
TMEM39A-208	ENST00000486159	MT4	P47944	62 aa		3.44	□□□□□ -1.86
TMEM39A-208	ENST00000486159	LCE1F	Q5T754	118 aa		3.43	□□□□□ -1.86
TMEM39A-208	ENST00000486159	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.41	□□□□□ -1.86
TMEM39A-208	ENST00000486159	KRTAP19-5	Q3LI72	72 aa		3.39	□□□□□ -1.87
TMEM39A-208	ENST00000486159	KRTAP5-11	Q6L8G4	156 aa		3.37	□□□□□ -1.87
TMEM39A-208	ENST00000486159	LUZP6	Q538Z0	58 aa		3.36	□□□□□ -1.87
TMEM39A-208	ENST00000486159	KRTAP4-3	Q9BYR4	195 aa		3.34	□□□□□ -1.87
TMEM39A-208	ENST00000486159	MUC5AC	P98088	5654 aa		3.33	□□□□□ -1.88
TMEM39A-208	ENST00000486159	MT1G	P13640	62 aa		3.33	□□□□□ -1.88
TMEM39A-208	ENST00000486159	MT1M	Q8N339	61 aa		3.32	□□□□□ -1.88
TMEM39A-208	ENST00000486159	MT1L	Q93083	61 aa		3.3	□□□□□ -1.88
TMEM39A-208	ENST00000486159	LCE3C	Q5T5A8	94 aa		3.26	□□□□□ -1.89
TMEM39A-208	ENST00000486159	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.25	□□□□□ -1.89
TMEM39A-208	ENST00000486159	KRTAP5-4	Q6L8H1	288 aa		3.23	□□□□□ -1.89
TMEM39A-208	ENST00000486159	KRTAP9-6	A8MVA2	160 aa		3.12	□□□□□ -1.91
TMEM39A-208	ENST00000486159	KRTAP20-2	Q3LI61	65 aa		3.07	□□□□□ -1.92
TMEM39A-208	ENST00000486159	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.06	□□□□□ -1.92
TMEM39A-208	ENST00000486159	SYNE1	Q8NF91	8797 aa	Known RBP	3	□□□□□ -1.93
TMEM39A-208	ENST00000486159	KRTAP5-8	O75690	187 aa		2.97	□□□□□ -1.93
TMEM39A-208	ENST00000486159	KRTAP12-4	P60329	112 aa		2.94	□□□□□ -1.94
TMEM39A-208	ENST00000486159	LCE3E	Q5T5B0	92 aa		2.91	□□□□□ -1.94
TMEM39A-208	ENST00000486159	KRTAP6-1	Q3LI64	71 aa		2.83	□□□□□ -1.96
TMEM39A-208	ENST00000486159	KRTAP5-1	Q6L8H4	278 aa		2.83	□□□□□ -1.96
TMEM39A-208	ENST00000486159	KRTAP5-2	Q701N4	177 aa		2.81	□□□□□ -1.96
TMEM39A-208	ENST00000486159	INE1	O15225	51 aa		2.8	□□□□□ -1.96
TMEM39A-208	ENST00000486159	MT1A	P04731	61 aa		2.78	□□□□□ -1.96
TMEM39A-208	ENST00000486159	KRTAP6-2	Q3LI66	62 aa		2.72	□□□□□ -1.97
TMEM39A-208	ENST00000486159	KRTAP4-4	Q9BYR3	166 aa		2.67	□□□□□ -1.98
TMEM39A-208	ENST00000486159	OBSCN	Q5VST9	7968 aa		2.64	□□□□□ -1.99
TMEM39A-208	ENST00000486159	LCE3D	Q9BYE3	92 aa		2.47	□□□□□ -2.01
TMEM39A-208	ENST00000486159	LCE1C	Q5T751	118 aa		2.31	□□□□□ -2.04
TMEM39A-208	ENST00000486159	LCE1B	Q5T7P3	118 aa		2.31	□□□□□ -2.04
TMEM39A-208	ENST00000486159	PHGR1	C9JFL3	82 aa		2.28	□□□□□ -2.04
TMEM39A-208	ENST00000486159	PRM1	P04553	51 aa		2.1	□□□□□ -2.07
TMEM39A-208	ENST00000486159	KRTAP21-2	Q3LI59	83 aa		1.86	□□□□□ -2.11
TMEM39A-208	ENST00000486159	MUC19	Q7Z5P9	8384 aa		1.79	□□□□□ -2.12
TMEM39A-208	ENST00000486159	KRTAP21-1	Q3LI58	79 aa		1.72	□□□□□ -2.13
TMEM39A-208	ENST00000486159	MUC16	Q8WXI7	14507 aa		1.17	□□□□□ -2.22

Retrieved 78 of 20,778 RNA–protein pairs in 13.7 ms