RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SPRR2AP35326 72 aa6.72□□□□□ -1.33
TRIM54-203ENST00000485306 CDC42SE1Q9NRR8 79 aa6.71□□□□□ -1.34
TRIM54-203ENST00000485306 KRTAP2-3P0C7H8 128 aa6.68□□□□□ -1.34
TRIM54-203ENST00000485306 KRTAP2-4Q9BYR9 128 aa6.68□□□□□ -1.34
TRIM54-203ENST00000485306 KRTAP15-1Q3LI76 137 aa6.67□□□□□ -1.34
TRIM54-203ENST00000485306 KRTAP10-7P60409 375 aaPredicted RBP6.62□□□□□ -1.35
TRIM54-203ENST00000485306 KRTAP10-12P60413 245 aa6.6□□□□□ -1.35
TRIM54-203ENST00000485306 LCE1AQ5T7P2 110 aa6.6□□□□□ -1.35
TRIM54-203ENST00000485306 SPRR2DP22532 72 aa6.5□□□□□ -1.37
TRIM54-203ENST00000485306 C10orf95Q9H7T3 257 aa6.49□□□□□ -1.37
TRIM54-203ENST00000485306 BRK1Q8WUW1 75 aa6.48□□□□□ -1.37
TRIM54-203ENST00000485306 KRTAP2-2Q9BYT5 123 aa6.47□□□□□ -1.37
TRIM54-203ENST00000485306 KRTAP2-1Q9BYU5 128 aa6.47□□□□□ -1.37
TRIM54-203ENST00000485306 SVIPQ8NHG7 77 aa6.46□□□□□ -1.38
TRIM54-203ENST00000485306 TNP1P09430 55 aa6.43□□□□□ -1.38
TRIM54-203ENST00000485306 ROMO1P60602 79 aa6.34□□□□□ -1.39
TRIM54-203ENST00000485306 KRTAP25-1Q3LHN0 102 aa6.34□□□□□ -1.39
TRIM54-203ENST00000485306 KRTAP19-7Q3SYF9 63 aa6.2□□□□□ -1.42
TRIM54-203ENST00000485306 PRO0628Q9UI54 55 aa6.19□□□□□ -1.42
TRIM54-203ENST00000485306 LCE3AQ5TA76 89 aa6.16□□□□□ -1.42
TRIM54-203ENST00000485306 MT1EP04732 61 aa6.15□□□□□ -1.42
TRIM54-203ENST00000485306 PMAIP1Q13794 54 aa6.14□□□□□ -1.43
TRIM54-203ENST00000485306 KRTAP19-3Q7Z4W3 81 aa6.13□□□□□ -1.43
TRIM54-203ENST00000485306 DSTQ03001 7570 aaKnown RBP6.12□□□□□ -1.43
TRIM54-203ENST00000485306 KRTAP19-5Q3LI72 72 aa6.07□□□□□ -1.44
TRIM54-203ENST00000485306 PP632Q6XCG6 107 aa6.07□□□□□ -1.44
TRIM54-203ENST00000485306 MT1GP13640 62 aa6.01□□□□□ -1.45
TRIM54-203ENST00000485306 KRTAP12-3P60328 96 aa5.96□□□□□ -1.46
TRIM54-203ENST00000485306 MT1LQ93083 61 aa5.89□□□□□ -1.47
TRIM54-203ENST00000485306 A0A0A0MQY5 61 aa5.86□□□□□ -1.47
TRIM54-203ENST00000485306 MT1MQ8N339 61 aa5.86□□□□□ -1.47
TRIM54-203ENST00000485306 KTN1-AS1Q86SY8 53 aa5.78□□□□□ -1.48
TRIM54-203ENST00000485306 PRAC1Q96KF2 57 aa5.73□□□□□ -1.49
TRIM54-203ENST00000485306 GPR98Q8WXG9 6306 aa5.72□□□□□ -1.49
TRIM54-203ENST00000485306 KRTAP5-3Q6L8H2 238 aa5.71□□□□□ -1.5
TRIM54-203ENST00000485306 KRTAP4-3Q9BYR4 195 aa5.7□□□□□ -1.5
TRIM54-203ENST00000485306 MT4P47944 62 aa5.68□□□□□ -1.5
TRIM54-203ENST00000485306 KRTAP5-4Q6L8H1 288 aa5.6□□□□□ -1.51
TRIM54-203ENST00000485306 HMCN1Q96RW7 5635 aa5.58□□□□□ -1.52
TRIM54-203ENST00000485306 LCE3CQ5T5A8 94 aa5.54□□□□□ -1.52
TRIM54-203ENST00000485306 AHNAK2Q8IVF2 5795 aa5.36□□□□□ -1.55
TRIM54-203ENST00000485306 KRTAP5-5Q701N2 237 aaPredicted RBP5.35□□□□□ -1.55
TRIM54-203ENST00000485306 KRTAP5-10Q6L8G5 202 aa5.32□□□□□ -1.56
TRIM54-203ENST00000485306 KRTAP12-4P60329 112 aa5.31□□□□□ -1.56
TRIM54-203ENST00000485306 SPRR5A0A1B0GTR4 108 aa5.3□□□□□ -1.56
TRIM54-203ENST00000485306 KRTAP20-2Q3LI61 65 aa5.3□□□□□ -1.56
TRIM54-203ENST00000485306 MT3P25713 68 aa5.23□□□□□ -1.57
TRIM54-203ENST00000485306 SYNE1Q8NF91 8797 aaKnown RBP5.18□□□□□ -1.58
TRIM54-203ENST00000485306 KRTAP9-6A8MVA2 160 aa5.15□□□□□ -1.59
TRIM54-203ENST00000485306 KRTAP5-7Q6L8G8 165 aa5.14□□□□□ -1.59
TRIM54-203ENST00000485306 MT1AP04731 61 aa5.01□□□□□ -1.61
TRIM54-203ENST00000485306 KRTAP6-1Q3LI64 71 aa4.97□□□□□ -1.61
TRIM54-203ENST00000485306 KRTAP5-2Q701N4 177 aa4.89□□□□□ -1.63
TRIM54-203ENST00000485306 LUZP6Q538Z0 58 aa4.84□□□□□ -1.63
TRIM54-203ENST00000485306 KRTAP6-2Q3LI66 62 aa4.77□□□□□ -1.65
TRIM54-203ENST00000485306 NDUFAF8A1L188 74 aa4.74□□□□□ -1.65
TRIM54-203ENST00000485306 LCE1EQ5T753 118 aa4.7□□□□□ -1.66
TRIM54-203ENST00000485306 OBSCNQ5VST9 7968 aa4.68□□□□□ -1.66
TRIM54-203ENST00000485306 LCE1FQ5T754 118 aa4.68□□□□□ -1.66
TRIM54-203ENST00000485306 KRTAP5-8O75690 187 aa4.67□□□□□ -1.66
TRIM54-203ENST00000485306 KRTAP5-11Q6L8G4 156 aa4.6□□□□□ -1.67
TRIM54-203ENST00000485306 MUC5BQ9HC84 5762 aaPredicted RBP4.44□□□□□ -1.7
TRIM54-203ENST00000485306 MUC5ACP98088 5654 aa4.43□□□□□ -1.7
TRIM54-203ENST00000485306 AHNAKQ09666 5890 aaKnown RBP4.42□□□□□ -1.7
TRIM54-203ENST00000485306 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.41□□□□□ -1.7
TRIM54-203ENST00000485306 KRTAP5-1Q6L8H4 278 aa4.39□□□□□ -1.71
TRIM54-203ENST00000485306 LCE3DQ9BYE3 92 aa4.11□□□□□ -1.75
TRIM54-203ENST00000485306 LCE3EQ5T5B0 92 aa3.99□□□□□ -1.77
TRIM54-203ENST00000485306 LCE1BQ5T7P3 118 aa3.99□□□□□ -1.77
TRIM54-203ENST00000485306 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
TRIM54-203ENST00000485306 INE1O15225 51 aa3.69□□□□□ -1.82
TRIM54-203ENST00000485306 KRTAP4-4Q9BYR3 166 aa3.66□□□□□ -1.82
TRIM54-203ENST00000485306 KRTAP21-2Q3LI59 83 aa3.27□□□□□ -1.89
TRIM54-203ENST00000485306 PRM1P04553 51 aa3.24□□□□□ -1.89
TRIM54-203ENST00000485306 PHGR1C9JFL3 82 aa3.13□□□□□ -1.91
TRIM54-203ENST00000485306 MUC19Q7Z5P9 8384 aa2.87□□□□□ -1.95
TRIM54-203ENST00000485306 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
TRIM54-203ENST00000485306 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 73.4 ms