RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 MT1EP04732 61 aa4.87□□□□□ -1.63
HDAC6-227ENST00000485102 CDC42SE1Q9NRR8 79 aa4.85□□□□□ -1.63
HDAC6-227ENST00000485102 LCE1DQ5T752 114 aa4.83□□□□□ -1.64
HDAC6-227ENST00000485102 TNP1P09430 55 aa4.8□□□□□ -1.64
HDAC6-227ENST00000485102 LCE4AQ5TA78 99 aa4.78□□□□□ -1.64
HDAC6-227ENST00000485102 HMCN1Q96RW7 5635 aa4.77□□□□□ -1.65
HDAC6-227ENST00000485102 MT1GP13640 62 aa4.77□□□□□ -1.65
HDAC6-227ENST00000485102 KRTAP25-1Q3LHN0 102 aa4.71□□□□□ -1.66
HDAC6-227ENST00000485102 PP632Q6XCG6 107 aa4.71□□□□□ -1.66
HDAC6-227ENST00000485102 AHNAK2Q8IVF2 5795 aa4.7□□□□□ -1.66
HDAC6-227ENST00000485102 C10orf95Q9H7T3 257 aa4.7□□□□□ -1.66
HDAC6-227ENST00000485102 MT4P47944 62 aa4.69□□□□□ -1.66
HDAC6-227ENST00000485102 KRTAP19-5Q3LI72 72 aa4.67□□□□□ -1.66
HDAC6-227ENST00000485102 KRTAP5-10Q6L8G5 202 aa4.67□□□□□ -1.66
HDAC6-227ENST00000485102 KRTAP5-4Q6L8H1 288 aa4.66□□□□□ -1.66
HDAC6-227ENST00000485102 MT1MQ8N339 61 aa4.65□□□□□ -1.67
HDAC6-227ENST00000485102 BRK1Q8WUW1 75 aa4.64□□□□□ -1.67
HDAC6-227ENST00000485102 ROMO1P60602 79 aa4.63□□□□□ -1.67
HDAC6-227ENST00000485102 KRTAP23-1A1A580 65 aa4.61□□□□□ -1.67
HDAC6-227ENST00000485102 MT1LQ93083 61 aa4.6□□□□□ -1.67
HDAC6-227ENST00000485102 KRTAP4-6Q9BYQ5 205 aa4.57□□□□□ -1.68
HDAC6-227ENST00000485102 KRTAP5-7Q6L8G8 165 aa4.54□□□□□ -1.68
HDAC6-227ENST00000485102 KRTAP4-3Q9BYR4 195 aa4.51□□□□□ -1.69
HDAC6-227ENST00000485102 LCE3AQ5TA76 89 aa4.49□□□□□ -1.69
HDAC6-227ENST00000485102 KRTAP5-3Q6L8H2 238 aa4.48□□□□□ -1.69
HDAC6-227ENST00000485102 PMAIP1Q13794 54 aa4.42□□□□□ -1.7
HDAC6-227ENST00000485102 KRTAP19-4Q3LI73 84 aa4.42□□□□□ -1.7
HDAC6-227ENST00000485102 KRTAP12-3P60328 96 aa4.41□□□□□ -1.7
HDAC6-227ENST00000485102 PRO0628Q9UI54 55 aa4.41□□□□□ -1.7
HDAC6-227ENST00000485102 KRTAP20-2Q3LI61 65 aa4.38□□□□□ -1.71
HDAC6-227ENST00000485102 SPRR5A0A1B0GTR4 108 aa4.37□□□□□ -1.71
HDAC6-227ENST00000485102 KRTAP5-5Q701N2 237 aaPredicted RBP4.33□□□□□ -1.72
HDAC6-227ENST00000485102 KRTAP4-7Q9BYR0 210 aa4.32□□□□□ -1.72
HDAC6-227ENST00000485102 KRTAP12-4P60329 112 aa4.28□□□□□ -1.72
HDAC6-227ENST00000485102 KRTAP15-1Q3LI76 137 aa4.25□□□□□ -1.73
HDAC6-227ENST00000485102 SYNE1Q8NF91 8797 aaKnown RBP4.18□□□□□ -1.74
HDAC6-227ENST00000485102 KTN1-AS1Q86SY8 53 aa4.13□□□□□ -1.75
HDAC6-227ENST00000485102 LOC100996750A0A140TA64 210 aa4.1□□□□□ -1.75
HDAC6-227ENST00000485102 LCE3CQ5T5A8 94 aa4.08□□□□□ -1.76
HDAC6-227ENST00000485102 KRTAP4-11Q9BYQ6 195 aa4.08□□□□□ -1.76
HDAC6-227ENST00000485102 KRTAP5-2Q701N4 177 aa4.03□□□□□ -1.76
HDAC6-227ENST00000485102 PRAC1Q96KF2 57 aa4.01□□□□□ -1.77
HDAC6-227ENST00000485102 KRTAP5-8O75690 187 aa3.95□□□□□ -1.78
HDAC6-227ENST00000485102 MUC5BQ9HC84 5762 aaPredicted RBP3.94□□□□□ -1.78
HDAC6-227ENST00000485102 AHNAKQ09666 5890 aaKnown RBP3.93□□□□□ -1.78
HDAC6-227ENST00000485102 MUC5ACP98088 5654 aa3.93□□□□□ -1.78
HDAC6-227ENST00000485102 MT1AP04731 61 aa3.92□□□□□ -1.78
HDAC6-227ENST00000485102 SVIPQ8NHG7 77 aa3.9□□□□□ -1.79
HDAC6-227ENST00000485102 KRTAP6-1Q3LI64 71 aa3.89□□□□□ -1.79
HDAC6-227ENST00000485102 KRTAP9-4Q9BYQ2 154 aa3.83□□□□□ -1.8
HDAC6-227ENST00000485102 OBSCNQ5VST9 7968 aa3.82□□□□□ -1.8
HDAC6-227ENST00000485102 KRTAP9-9Q9BYP9 154 aa3.79□□□□□ -1.8
HDAC6-227ENST00000485102 KRTAP6-2Q3LI66 62 aa3.77□□□□□ -1.81
HDAC6-227ENST00000485102 KRTAP9-6A8MVA2 160 aa3.69□□□□□ -1.82
HDAC6-227ENST00000485102 KRTAP5-1Q6L8H4 278 aa3.66□□□□□ -1.82
HDAC6-227ENST00000485102 MT3P25713 68 aa3.61□□□□□ -1.83
HDAC6-227ENST00000485102 LUZP6Q538Z0 58 aa3.61□□□□□ -1.83
HDAC6-227ENST00000485102 LCE1EQ5T753 118 aa3.43□□□□□ -1.86
HDAC6-227ENST00000485102 H3BS24 57 aa3.23□□□□□ -1.89
HDAC6-227ENST00000485102 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
HDAC6-227ENST00000485102 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
HDAC6-227ENST00000485102 LCE1BQ5T7P3 118 aa3.17□□□□□ -1.9
HDAC6-227ENST00000485102 NDUFAF8A1L188 74 aa3.07□□□□□ -1.92
HDAC6-227ENST00000485102 LCE3DQ9BYE3 92 aa3.05□□□□□ -1.92
HDAC6-227ENST00000485102 KRTAP4-12Q9BQ66 201 aa2.97□□□□□ -1.93
HDAC6-227ENST00000485102 LCE3EQ5T5B0 92 aa2.93□□□□□ -1.94
HDAC6-227ENST00000485102 KRTAP5-11Q6L8G4 156 aa2.92□□□□□ -1.94
HDAC6-227ENST00000485102 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
HDAC6-227ENST00000485102 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.87□□□□□ -1.95
HDAC6-227ENST00000485102 A0A0A0MQY5 61 aa2.79□□□□□ -1.96
HDAC6-227ENST00000485102 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
HDAC6-227ENST00000485102 INE1O15225 51 aa2.69□□□□□ -1.98
HDAC6-227ENST00000485102 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
HDAC6-227ENST00000485102 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
HDAC6-227ENST00000485102 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
HDAC6-227ENST00000485102 PRM1P04553 51 aa2.32□□□□□ -2.04
HDAC6-227ENST00000485102 KRTAP21-1Q3LI58 79 aa2.08□□□□□ -2.08
HDAC6-227ENST00000485102 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 162.9 ms