RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 SPRR2EP22531 72 aa2.4□□□□□ -2.03
COL17A1-206ENST00000483876 SPRR2BP35325 72 aa2.4□□□□□ -2.03
COL17A1-206ENST00000483876 SPRR2AP35326 72 aa2.4□□□□□ -2.03
COL17A1-206ENST00000483876 LINC01554Q52M75 96 aa2.4□□□□□ -2.03
COL17A1-206ENST00000483876 KRTAP19-8Q3LI54 63 aa2.35□□□□□ -2.03
COL17A1-206ENST00000483876 PLAC4Q8WY50 150 aa2.34□□□□□ -2.03
COL17A1-206ENST00000483876 DSTQ03001 7570 aaKnown RBP2.33□□□□□ -2.04
COL17A1-206ENST00000483876 SPRR5A0A1B0GTR4 108 aa2.33□□□□□ -2.04
COL17A1-206ENST00000483876 KRTAP23-1A1A580 65 aa2.33□□□□□ -2.04
COL17A1-206ENST00000483876 SPRR2DP22532 72 aa2.33□□□□□ -2.04
COL17A1-206ENST00000483876 CAMK2N1Q7Z7J9 78 aa2.33□□□□□ -2.04
COL17A1-206ENST00000483876 AHNAK2Q8IVF2 5795 aa2.32□□□□□ -2.04
COL17A1-206ENST00000483876 KRTAP25-1Q3LHN0 102 aa2.32□□□□□ -2.04
COL17A1-206ENST00000483876 PRAC1Q96KF2 57 aa2.32□□□□□ -2.04
COL17A1-206ENST00000483876 C10orf95Q9H7T3 257 aa2.32□□□□□ -2.04
COL17A1-206ENST00000483876 KRTAP5-10Q6L8G5 202 aa2.3□□□□□ -2.04
COL17A1-206ENST00000483876 SPRR2FQ96RM1 72 aa2.3□□□□□ -2.04
COL17A1-206ENST00000483876 LCE1AQ5T7P2 110 aa2.28□□□□□ -2.04
COL17A1-206ENST00000483876 KRTAP5-7Q6L8G8 165 aa2.28□□□□□ -2.04
COL17A1-206ENST00000483876 MT1BP07438 61 aa2.27□□□□□ -2.05
COL17A1-206ENST00000483876 TNP1P09430 55 aa2.26□□□□□ -2.05
COL17A1-206ENST00000483876 PP632Q6XCG6 107 aa2.26□□□□□ -2.05
COL17A1-206ENST00000483876 HMCN1Q96RW7 5635 aa2.24□□□□□ -2.05
COL17A1-206ENST00000483876 PRO2289Q9P1D8 64 aa2.23□□□□□ -2.05
COL17A1-206ENST00000483876 KRTAP10-5P60370 271 aa2.22□□□□□ -2.05
COL17A1-206ENST00000483876 MT1XP80297 61 aa2.21□□□□□ -2.06
COL17A1-206ENST00000483876 KRTAP15-1Q3LI76 137 aa2.17□□□□□ -2.06
COL17A1-206ENST00000483876 KRTAP10-12P60413 245 aa2.13□□□□□ -2.07
COL17A1-206ENST00000483876 KRTAP8-1Q8IUC2 63 aa2.13□□□□□ -2.07
COL17A1-206ENST00000483876 MT4P47944 62 aa2.1□□□□□ -2.07
COL17A1-206ENST00000483876 KRTAP10-7P60409 375 aaPredicted RBP2.1□□□□□ -2.07
COL17A1-206ENST00000483876 LCE3AQ5TA76 89 aa2.1□□□□□ -2.07
COL17A1-206ENST00000483876 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.09□□□□□ -2.07
COL17A1-206ENST00000483876 AHNAKQ09666 5890 aaKnown RBP2.08□□□□□ -2.08
COL17A1-206ENST00000483876 KRTAP12-3P60328 96 aa2.05□□□□□ -2.08
COL17A1-206ENST00000483876 A0A0A0MQY5 61 aa2.04□□□□□ -2.08
COL17A1-206ENST00000483876 KRTAP19-5Q3LI72 72 aa2□□□□□ -2.09
COL17A1-206ENST00000483876 MUC5ACP98088 5654 aa1.99□□□□□ -2.09
COL17A1-206ENST00000483876 MUC5BQ9HC84 5762 aaPredicted RBP1.99□□□□□ -2.09
COL17A1-206ENST00000483876 KRTAP19-7Q3SYF9 63 aa1.98□□□□□ -2.09
COL17A1-206ENST00000483876 LUZP6Q538Z0 58 aa1.95□□□□□ -2.1
COL17A1-206ENST00000483876 MT1EP04732 61 aa1.94□□□□□ -2.1
COL17A1-206ENST00000483876 LCE3CQ5T5A8 94 aa1.94□□□□□ -2.1
COL17A1-206ENST00000483876 MT1LQ93083 61 aa1.91□□□□□ -2.1
COL17A1-206ENST00000483876 NDUFAF8A1L188 74 aa1.89□□□□□ -2.11
COL17A1-206ENST00000483876 MT1GP13640 62 aa1.89□□□□□ -2.11
COL17A1-206ENST00000483876 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
COL17A1-206ENST00000483876 KRTAP19-3Q7Z4W3 81 aa1.86□□□□□ -2.11
COL17A1-206ENST00000483876 KRTAP5-4Q6L8H1 288 aa1.85□□□□□ -2.11
COL17A1-206ENST00000483876 MT1MQ8N339 61 aa1.82□□□□□ -2.12
COL17A1-206ENST00000483876 KRTAP5-8O75690 187 aa1.8□□□□□ -2.12
COL17A1-206ENST00000483876 KRTAP20-2Q3LI61 65 aa1.8□□□□□ -2.12
COL17A1-206ENST00000483876 KRTAP9-6A8MVA2 160 aa1.79□□□□□ -2.12
COL17A1-206ENST00000483876 KRTAP5-1Q6L8H4 278 aa1.77□□□□□ -2.13
COL17A1-206ENST00000483876 SYNE1Q8NF91 8797 aaKnown RBP1.75□□□□□ -2.13
COL17A1-206ENST00000483876 KRTAP4-3Q9BYR4 195 aa1.74□□□□□ -2.13
COL17A1-206ENST00000483876 KRTAP4-4Q9BYR3 166 aa1.73□□□□□ -2.13
COL17A1-206ENST00000483876 KRTAP5-2Q701N4 177 aa1.67□□□□□ -2.14
COL17A1-206ENST00000483876 KRTAP5-5Q701N2 237 aaPredicted RBP1.65□□□□□ -2.15
COL17A1-206ENST00000483876 KRTAP12-4P60329 112 aa1.64□□□□□ -2.15
COL17A1-206ENST00000483876 INE1O15225 51 aa1.63□□□□□ -2.15
COL17A1-206ENST00000483876 MT1AP04731 61 aa1.63□□□□□ -2.15
COL17A1-206ENST00000483876 LCE1EQ5T753 118 aa1.63□□□□□ -2.15
COL17A1-206ENST00000483876 OBSCNQ5VST9 7968 aa1.62□□□□□ -2.15
COL17A1-206ENST00000483876 MT3P25713 68 aa1.61□□□□□ -2.15
COL17A1-206ENST00000483876 KRTAP6-1Q3LI64 71 aa1.59□□□□□ -2.15
COL17A1-206ENST00000483876 LCE1FQ5T754 118 aa1.56□□□□□ -2.16
COL17A1-206ENST00000483876 KRTAP6-2Q3LI66 62 aa1.46□□□□□ -2.18
COL17A1-206ENST00000483876 LCE3DQ9BYE3 92 aa1.46□□□□□ -2.18
COL17A1-206ENST00000483876 LCE3EQ5T5B0 92 aa1.43□□□□□ -2.18
COL17A1-206ENST00000483876 PHGR1C9JFL3 82 aa1.39□□□□□ -2.19
COL17A1-206ENST00000483876 PRM1P04553 51 aa1.22□□□□□ -2.21
COL17A1-206ENST00000483876 LCE1CQ5T751 118 aa1.22□□□□□ -2.21
COL17A1-206ENST00000483876 LCE1BQ5T7P3 118 aa1.22□□□□□ -2.21
COL17A1-206ENST00000483876 KRTAP21-2Q3LI59 83 aa1.06□□□□□ -2.24
COL17A1-206ENST00000483876 KRTAP21-1Q3LI58 79 aa1.05□□□□□ -2.24
COL17A1-206ENST00000483876 MUC19Q7Z5P9 8384 aa1.03□□□□□ -2.24
COL17A1-206ENST00000483876 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 64.5 ms