RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.23□□□□□ -1.89
SYNE1-225ENST00000481502 PP632Q6XCG6 107 aa3.2□□□□□ -1.9
SYNE1-225ENST00000481502 SVIPQ8NHG7 77 aa3.18□□□□□ -1.9
SYNE1-225ENST00000481502 KRTAP6-3Q3LI67 103 aa3.17□□□□□ -1.9
SYNE1-225ENST00000481502 KRTAP8-1Q8IUC2 63 aa3.16□□□□□ -1.9
SYNE1-225ENST00000481502 KRTAP5-9P26371 169 aa3.15□□□□□ -1.91
SYNE1-225ENST00000481502 LCE1AQ5T7P2 110 aa3.15□□□□□ -1.91
SYNE1-225ENST00000481502 LCE3AQ5TA76 89 aa3.12□□□□□ -1.91
SYNE1-225ENST00000481502 SYNE2Q8WXH0 6885 aaKnown RBP3.11□□□□□ -1.91
SYNE1-225ENST00000481502 KRTAP19-7Q3SYF9 63 aa3.07□□□□□ -1.92
SYNE1-225ENST00000481502 KMT2DO14686 5537 aa3.06□□□□□ -1.92
SYNE1-225ENST00000481502 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
SYNE1-225ENST00000481502 KTN1-AS1Q86SY8 53 aa3.06□□□□□ -1.92
SYNE1-225ENST00000481502 KRTAP12-3P60328 96 aa3.05□□□□□ -1.92
SYNE1-225ENST00000481502 SPRR2FQ96RM1 72 aa3.05□□□□□ -1.92
SYNE1-225ENST00000481502 KRTAP19-5Q3LI72 72 aa3.04□□□□□ -1.92
SYNE1-225ENST00000481502 MT1EP04732 61 aa3.03□□□□□ -1.92
SYNE1-225ENST00000481502 MT1GP13640 62 aa2.97□□□□□ -1.93
SYNE1-225ENST00000481502 KRTAP19-3Q7Z4W3 81 aa2.97□□□□□ -1.93
SYNE1-225ENST00000481502 MT1LQ93083 61 aa2.95□□□□□ -1.94
SYNE1-225ENST00000481502 SPRR2EP22531 72 aa2.94□□□□□ -1.94
SYNE1-225ENST00000481502 SPRR2BP35325 72 aa2.94□□□□□ -1.94
SYNE1-225ENST00000481502 SPRR2AP35326 72 aa2.94□□□□□ -1.94
SYNE1-225ENST00000481502 PRAC1Q96KF2 57 aa2.94□□□□□ -1.94
SYNE1-225ENST00000481502 KRTAP2-2Q9BYT5 123 aa2.92□□□□□ -1.94
SYNE1-225ENST00000481502 MUC12Q9UKN1 5478 aa2.92□□□□□ -1.94
SYNE1-225ENST00000481502 NEBP20929 6669 aa2.9□□□□□ -1.94
SYNE1-225ENST00000481502 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
SYNE1-225ENST00000481502 A0A0A0MQY5 61 aa2.88□□□□□ -1.95
SYNE1-225ENST00000481502 MT1MQ8N339 61 aa2.86□□□□□ -1.95
SYNE1-225ENST00000481502 SPRR2DP22532 72 aa2.84□□□□□ -1.95
SYNE1-225ENST00000481502 LCE3CQ5T5A8 94 aa2.84□□□□□ -1.95
SYNE1-225ENST00000481502 LCE1EQ5T753 118 aa2.83□□□□□ -1.96
SYNE1-225ENST00000481502 KRTAP2-3P0C7H8 128 aa2.8□□□□□ -1.96
SYNE1-225ENST00000481502 KRTAP2-4Q9BYR9 128 aa2.8□□□□□ -1.96
SYNE1-225ENST00000481502 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
SYNE1-225ENST00000481502 DSTQ03001 7570 aaKnown RBP2.76□□□□□ -1.97
SYNE1-225ENST00000481502 KRTAP20-1Q3LI63 56 aa2.75□□□□□ -1.97
SYNE1-225ENST00000481502 MT3P25713 68 aa2.74□□□□□ -1.97
SYNE1-225ENST00000481502 KRTAP2-1Q9BYU5 128 aa2.73□□□□□ -1.97
SYNE1-225ENST00000481502 SPRR5A0A1B0GTR4 108 aa2.72□□□□□ -1.97
SYNE1-225ENST00000481502 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
SYNE1-225ENST00000481502 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
SYNE1-225ENST00000481502 KRTAP4-3Q9BYR4 195 aa2.69□□□□□ -1.98
SYNE1-225ENST00000481502 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
SYNE1-225ENST00000481502 KRTAP9-6A8MVA2 160 aa2.61□□□□□ -1.99
SYNE1-225ENST00000481502 LUZP6Q538Z0 58 aa2.56□□□□□ -2
SYNE1-225ENST00000481502 MT1AP04731 61 aa2.54□□□□□ -2
SYNE1-225ENST00000481502 LCE1FQ5T754 118 aa2.54□□□□□ -2
SYNE1-225ENST00000481502 SYNE1Q8NF91 8797 aaKnown RBP2.5□□□□□ -2.01
SYNE1-225ENST00000481502 KRTAP12-4P60329 112 aa2.5□□□□□ -2.01
SYNE1-225ENST00000481502 KRTAP6-1Q3LI64 71 aa2.45□□□□□ -2.02
SYNE1-225ENST00000481502 MT4P47944 62 aa2.42□□□□□ -2.02
SYNE1-225ENST00000481502 KRTAP20-2Q3LI61 65 aa2.4□□□□□ -2.03
SYNE1-225ENST00000481502 HMCN1Q96RW7 5635 aa2.37□□□□□ -2.03
SYNE1-225ENST00000481502 NDUFAF8A1L188 74 aa2.35□□□□□ -2.03
SYNE1-225ENST00000481502 OBSCNQ5VST9 7968 aa2.33□□□□□ -2.04
SYNE1-225ENST00000481502 KRTAP5-2Q701N4 177 aa2.33□□□□□ -2.04
SYNE1-225ENST00000481502 KRTAP6-2Q3LI66 62 aa2.28□□□□□ -2.04
SYNE1-225ENST00000481502 LCE3EQ5T5B0 92 aa2.18□□□□□ -2.06
SYNE1-225ENST00000481502 AHNAK2Q8IVF2 5795 aa2.15□□□□□ -2.07
SYNE1-225ENST00000481502 KRTAP5-10Q6L8G5 202 aa2.14□□□□□ -2.07
SYNE1-225ENST00000481502 LCE3DQ9BYE3 92 aa2.12□□□□□ -2.07
SYNE1-225ENST00000481502 GPR98Q8WXG9 6306 aa2.07□□□□□ -2.08
SYNE1-225ENST00000481502 KRTAP5-7Q6L8G8 165 aa2.05□□□□□ -2.08
SYNE1-225ENST00000481502 KRTAP5-8O75690 187 aa2.04□□□□□ -2.08
SYNE1-225ENST00000481502 INE1O15225 51 aa2.01□□□□□ -2.09
SYNE1-225ENST00000481502 LCE1CQ5T751 118 aa1.94□□□□□ -2.1
SYNE1-225ENST00000481502 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
SYNE1-225ENST00000481502 MUC5ACP98088 5654 aa1.92□□□□□ -2.1
SYNE1-225ENST00000481502 MUC5BQ9HC84 5762 aaPredicted RBP1.77□□□□□ -2.13
SYNE1-225ENST00000481502 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
SYNE1-225ENST00000481502 PRM1P04553 51 aa1.65□□□□□ -2.15
SYNE1-225ENST00000481502 KRTAP21-2Q3LI59 83 aa1.64□□□□□ -2.15
SYNE1-225ENST00000481502 MUC19Q7Z5P9 8384 aa1.48□□□□□ -2.17
SYNE1-225ENST00000481502 PHGR1C9JFL3 82 aa1.46□□□□□ -2.18
SYNE1-225ENST00000481502 KRTAP21-1Q3LI58 79 aa1.03□□□□□ -2.24
SYNE1-225ENST00000481502 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 69.8 ms