RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ABCA5Q8WWZ7 1642 aa-1.23□□□□□ -2.61
UPF3B-203ENST00000478840 MUC3AQ02505 3323 aa-1.23□□□□□ -2.61
UPF3B-203ENST00000478840 SYCP2Q9BX26 1530 aa-1.26□□□□□ -2.61
UPF3B-203ENST00000478840 LOC400499M0QZD8 3231 aa-1.27□□□□□ -2.61
UPF3B-203ENST00000478840 SZT2Q5T011 3432 aa-1.27□□□□□ -2.61
UPF3B-203ENST00000478840 MKI67P46013 3256 aaKnown RBP-1.27□□□□□ -2.61
UPF3B-203ENST00000478840 PCNTO95613 3336 aa-1.27□□□□□ -2.61
UPF3B-203ENST00000478840 CMC2Q9NRP2 79 aa-1.28□□□□□ -2.61
UPF3B-203ENST00000478840 VCANP13611 3396 aa-1.29□□□□□ -2.62
UPF3B-203ENST00000478840 DEFB4AO15263 64 aa-1.3□□□□□ -2.62
UPF3B-203ENST00000478840 CFAP47Q6ZTR5 3102 aa-1.31□□□□□ -2.62
UPF3B-203ENST00000478840 ABCC8Q09428 1581 aa-1.32□□□□□ -2.62
UPF3B-203ENST00000478840 SMIM2Q9BVW6 85 aa-1.32□□□□□ -2.62
UPF3B-203ENST00000478840 TFF3Q07654 80 aa-1.34□□□□□ -2.62
UPF3B-203ENST00000478840 USP34Q70CQ2 3546 aa-1.35□□□□□ -2.62
UPF3B-203ENST00000478840 RPS29P62273 56 aaKnown RBP-1.36□□□□□ -2.63
UPF3B-203ENST00000478840 NRXN3Q9Y4C0 1643 aa-1.37□□□□□ -2.63
UPF3B-203ENST00000478840 UNC80Q8N2C7 3258 aa-1.38□□□□□ -2.63
UPF3B-203ENST00000478840 CEP250Q9BV73 2442 aa-1.38□□□□□ -2.63
UPF3B-203ENST00000478840 FANCD2Q9BXW9 1451 aa-1.38□□□□□ -2.63
UPF3B-203ENST00000478840 MROH2AA6NES4 1674 aa-1.39□□□□□ -2.63
UPF3B-203ENST00000478840 POLR2KP53803 58 aaKnown RBP-1.39□□□□□ -2.63
UPF3B-203ENST00000478840 ASPMQ8IZT6 3477 aa-1.41□□□□□ -2.63
UPF3B-203ENST00000478840 TRPM2O94759 1503 aa-1.41□□□□□ -2.64
UPF3B-203ENST00000478840 CENPFP49454 3210 aa-1.43□□□□□ -2.64
UPF3B-203ENST00000478840 DNAH12Q6ZR08 3092 aa-1.43□□□□□ -2.64
UPF3B-203ENST00000478840 DDX60Q8IY21 1712 aaKnown RBP-1.45□□□□□ -2.64
UPF3B-203ENST00000478840 IQGAP1P46940 1657 aa-1.48□□□□□ -2.65
UPF3B-203ENST00000478840 CDH23Q9H251 3354 aa-1.48□□□□□ -2.65
UPF3B-203ENST00000478840 DEFB136Q30KP8 78 aa-1.48□□□□□ -2.65
UPF3B-203ENST00000478840 KRTAP19-2Q3LHN2 52 aa-1.5□□□□□ -2.65
UPF3B-203ENST00000478840 BRCA2P51587 3418 aa-1.5□□□□□ -2.65
UPF3B-203ENST00000478840 LEAP2Q969E1 77 aa-1.52□□□□□ -2.65
UPF3B-203ENST00000478840 CLTCL1P53675 1640 aa-1.53□□□□□ -2.65
UPF3B-203ENST00000478840 VPS13AQ96RL7 3174 aa-1.53□□□□□ -2.65
UPF3B-203ENST00000478840 SNRPGP15A8MWD9 76 aa-1.54□□□□□ -2.66
UPF3B-203ENST00000478840 NFAT5O94916 1531 aa-1.55□□□□□ -2.66
UPF3B-203ENST00000478840 NDUFA1O15239 70 aa-1.55□□□□□ -2.66
UPF3B-203ENST00000478840 UTRNP46939 3433 aa-1.6□□□□□ -2.67
UPF3B-203ENST00000478840 XIRP2A4UGR9 3374 aa-1.61□□□□□ -2.67
UPF3B-203ENST00000478840 TTTY10Q9BZA0 68 aa-1.65□□□□□ -2.67
UPF3B-203ENST00000478840 GOLGB1Q14789 3259 aaKnown RBP-1.72□□□□□ -2.68
UPF3B-203ENST00000478840 IQGAP2Q13576 1575 aa-1.85□□□□□ -2.7
UPF3B-203ENST00000478840 DEFB133Q30KQ1 61 aa-1.87□□□□□ -2.71
UPF3B-203ENST00000478840 TOMM5Q8N4H5 51 aa-1.88□□□□□ -2.71
UPF3B-203ENST00000478840 DEFB104AQ8WTQ1 72 aa-1.88□□□□□ -2.71
UPF3B-203ENST00000478840 CD52P31358 61 aa-1.9□□□□□ -2.71
UPF3B-203ENST00000478840 TOMM7Q9P0U1 55 aa-1.9□□□□□ -2.71
UPF3B-203ENST00000478840 SAMD9LQ8IVG5 1584 aa-1.94□□□□□ -2.72
UPF3B-203ENST00000478840 LINC01590Q5TEZ4 76 aa-1.95□□□□□ -2.72
UPF3B-203ENST00000478840 ATP7AQ04656 1500 aa-1.97□□□□□ -2.73
UPF3B-203ENST00000478840 HTN1P15515 57 aa-1.98□□□□□ -2.73
UPF3B-203ENST00000478840 RHPN1-AS1Q9BWJ2 59 aa-1.98□□□□□ -2.73
UPF3B-203ENST00000478840 A0A096LNI7 61 aa-2□□□□□ -2.73
UPF3B-203ENST00000478840 DEFB124Q8NES8 71 aa-2.04□□□□□ -2.74
UPF3B-203ENST00000478840 LINC01556Q5JQF7 62 aa-2.06□□□□□ -2.74
UPF3B-203ENST00000478840 RPL39P62891 51 aaKnown RBP-2.07□□□□□ -2.74
UPF3B-203ENST00000478840 DUOX1Q9NRD9 1551 aa-2.11□□□□□ -2.75
UPF3B-203ENST00000478840 RPL39LQ96EH5 51 aaKnown RBP-2.21□□□□□ -2.76
UPF3B-203ENST00000478840 TOP2AP11388 1531 aaKnown RBP-2.25□□□□□ -2.77
UPF3B-203ENST00000478840 APELAP0DMC3 54 aa-2.26□□□□□ -2.77
UPF3B-203ENST00000478840 MROH2BQ7Z745 1585 aa-2.27□□□□□ -2.77
UPF3B-203ENST00000478840 A0A096LPF7 62 aa-2.27□□□□□ -2.77
UPF3B-203ENST00000478840 H3BUX3 64 aa-2.28□□□□□ -2.77
UPF3B-203ENST00000478840 HTN3P15516 51 aa-2.33□□□□□ -2.78
UPF3B-203ENST00000478840 H3BSH0 61 aa-2.4□□□□□ -2.79
UPF3B-203ENST00000478840 K7EIM0 57 aa-2.47□□□□□ -2.8
UPF3B-203ENST00000478840 PRCDQ00LT1 54 aa-2.48□□□□□ -2.81
UPF3B-203ENST00000478840 TMEM167AQ8TBQ9 72 aa-2.5□□□□□ -2.81
UPF3B-203ENST00000478840 Q9Y3F1 56 aa-2.5□□□□□ -2.81
UPF3B-203ENST00000478840 COX14Q96I36 57 aa-2.55□□□□□ -2.82
UPF3B-203ENST00000478840 ARHGAP5-AS1Q96IT6 56 aa-2.57□□□□□ -2.82
UPF3B-203ENST00000478840 DEFB108BQ8NET1 73 aa-2.59□□□□□ -2.82
UPF3B-203ENST00000478840 SNRPGP62308 76 aaKnown RBP-2.6□□□□□ -2.83
UPF3B-203ENST00000478840 STATHP02808 62 aa-2.63□□□□□ -2.83
UPF3B-203ENST00000478840 DEFB108AA8MXU0 73 aa-2.69□□□□□ -2.84
UPF3B-203ENST00000478840 GCC2Q8IWJ2 1684 aa-2.71□□□□□ -2.84
UPF3B-203ENST00000478840 RPL39P5Q59GN2 51 aa-2.71□□□□□ -2.84
Retrieved 78 of 20,778 RNA–protein pairs in 60.7 ms